ID D8S7J7_SELML Unreviewed; 630 AA.
AC D8S7J7;
DT 05-OCT-2010, integrated into UniProtKB/TrEMBL.
DT 05-OCT-2010, sequence version 1.
DT 27-MAR-2024, entry version 59.
DE RecName: Full=Histone deacetylase domain-containing protein {ECO:0000259|Pfam:PF00850};
DE Flags: Fragment;
GN ORFNames=SELMODRAFT_110614 {ECO:0000313|EMBL:EFJ19764.1};
OS Selaginella moellendorffii (Spikemoss).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella.
OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514};
RN [1] {ECO:0000313|EMBL:EFJ19764.1, ECO:0000313|Proteomes:UP000001514}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=21551031; DOI=10.1126/science.1203810;
RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M.,
RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W.,
RA Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D.,
RA Chapple C., Cheng C., Correa L.G., Dacre M., DeBarry J., Dreyer I.,
RA Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K.,
RA Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M.,
RA Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G.,
RA Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y.,
RA Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K.,
RA Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R.,
RA Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B.,
RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y.,
RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N.,
RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N.,
RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S.,
RA Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q.,
RA Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J.,
RA Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V.;
RT "The Selaginella genome identifies genetic changes associated with the
RT evolution of vascular plants.";
RL Science 332:960-963(2011).
CC -!- COFACTOR:
CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
CC Evidence={ECO:0000256|ARBA:ARBA00001947};
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DR EMBL; GL377605; EFJ19764.1; -; Genomic_DNA.
DR RefSeq; XP_002979356.1; XM_002979310.1.
DR AlphaFoldDB; D8S7J7; -.
DR STRING; 88036.D8S7J7; -.
DR EnsemblPlants; EFJ19764; EFJ19764; SELMODRAFT_110614.
DR Gramene; EFJ19764; EFJ19764; SELMODRAFT_110614.
DR KEGG; smo:SELMODRAFT_110614; -.
DR eggNOG; KOG1343; Eukaryota.
DR HOGENOM; CLU_019490_1_0_1; -.
DR InParanoid; D8S7J7; -.
DR OMA; FYPAEGD; -.
DR Proteomes; UP000001514; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0000118; C:histone deacetylase complex; IBA:GO_Central.
DR GO; GO:0004407; F:histone deacetylase activity; IBA:GO_Central.
DR GO; GO:0000122; P:negative regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR Gene3D; 3.10.490.10; Gamma-glutamyl cyclotransferase-like; 1.
DR Gene3D; 3.40.800.20; Histone deacetylase domain; 1.
DR InterPro; IPR000286; His_deacetylse.
DR InterPro; IPR023801; His_deacetylse_dom.
DR InterPro; IPR037138; His_deacetylse_dom_sf.
DR InterPro; IPR023696; Ureohydrolase_dom_sf.
DR PANTHER; PTHR10625:SF37; HISTONE DEACETYLASE 18-RELATED; 1.
DR PANTHER; PTHR10625; HISTONE DEACETYLASE HDAC1-RELATED; 1.
DR Pfam; PF00850; Hist_deacetyl; 1.
DR PRINTS; PR01270; HDASUPER.
DR SUPFAM; SSF52768; Arginase/deacetylase; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000001514}.
FT DOMAIN 24..326
FT /note="Histone deacetylase"
FT /evidence="ECO:0000259|Pfam:PF00850"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:EFJ19764.1"
SQ SEQUENCE 630 AA; 69284 MW; 59519DAABCBAAF3B CRC64;
RAMAVGLVYD RRMCAHRDPF NKLHPEQPAR ITAIWKRLED AGVLDRCVRV DARPATAEEL
ATVHTDRHIE KMSSVSSRAY GKEGRAALAR RYNSIYFNDG SSESALLAAG SVVELSLKVA
RGELASAAAI VRPPGHHAEA DEAMGFCLFN NVAVAAQILS SGKVSVAGSH KVLIVDWDVH
HGNGTQNMFW QDPNVLYFSV HRYDDGYFYP GGQEGNFDKV GGGAGAGFNI NVPWPRGGYS
DADYVAVWEH VLMPVAREFN PDIVLISGGF DSARGDPLGG CKLTPLGYSI MTQELMQLAG
GKIVLALEGG YNLESIAESY LACVQVLLGD IQSERHDIER AYESTWTIID KVRQELCQYW
PVLREKIEMP ASRSSPPKAF ERLTTEADAV EETHDGEVFV RSETVEIVQI SVSSEVSSPH
SPSPYIWYAT YGSNMWPARL MCYIQGGKVE GIEVPGQGLL EKTPPLEDFW LSAPHRLFFG
RERSLSWGNG GVAFLNPVPS DGDNCHLRAY KITLEQFNGI LAQENRLDSM AASGLVSPSH
FETLKSSPHI VDFIENAWYG SVLYLGDKNG APILTITCSQ RDAKRFECGE LPTRAPSVAY
QNTLINGLLE KGDLSHEQIL AYVTSRAPRS
//
