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Database: UniProt
Entry: D8SZH7_SELML
LinkDB: D8SZH7_SELML
Original site: D8SZH7_SELML 
ID   D8SZH7_SELML            Unreviewed;       690 AA.
AC   D8SZH7;
DT   05-OCT-2010, integrated into UniProtKB/TrEMBL.
DT   05-OCT-2010, sequence version 1.
DT   24-JAN-2024, entry version 51.
DE   RecName: Full=rhamnogalacturonan endolyase {ECO:0000256|ARBA:ARBA00012437};
DE            EC=4.2.2.23 {ECO:0000256|ARBA:ARBA00012437};
GN   ORFNames=SELMODRAFT_447445 {ECO:0000313|EMBL:EFJ10217.1};
OS   Selaginella moellendorffii (Spikemoss).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella.
OX   NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514};
RN   [1] {ECO:0000313|EMBL:EFJ10217.1, ECO:0000313|Proteomes:UP000001514}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=21551031; DOI=10.1126/science.1203810;
RA   Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M.,
RA   dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W.,
RA   Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D.,
RA   Chapple C., Cheng C., Correa L.G., Dacre M., DeBarry J., Dreyer I.,
RA   Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K.,
RA   Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M.,
RA   Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G.,
RA   Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y.,
RA   Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K.,
RA   Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R.,
RA   Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B.,
RA   Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y.,
RA   Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N.,
RA   Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N.,
RA   Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S.,
RA   Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q.,
RA   Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J.,
RA   Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V.;
RT   "The Selaginella genome identifies genetic changes associated with the
RT   evolution of vascular plants.";
RL   Science 332:960-963(2011).
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=Endotype eliminative cleavage of L-alpha-rhamnopyranosyl-
CC         (1->4)-alpha-D-galactopyranosyluronic acid bonds of
CC         rhamnogalacturonan I domains in ramified hairy regions of pectin
CC         leaving L-rhamnopyranose at the reducing end and 4-deoxy-4,5-
CC         unsaturated D-galactopyranosyluronic acid at the non-reducing end.;
CC         EC=4.2.2.23; Evidence={ECO:0000256|ARBA:ARBA00001324};
CC   -!- SUBCELLULAR LOCATION: Secreted {ECO:0000256|ARBA:ARBA00004613}.
CC   -!- SIMILARITY: Belongs to the polysaccharide lyase 4 family.
CC       {ECO:0000256|ARBA:ARBA00010418}.
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DR   EMBL; GL377655; EFJ10217.1; -; Genomic_DNA.
DR   RefSeq; XP_002988706.1; XM_002988660.1.
DR   AlphaFoldDB; D8SZH7; -.
DR   STRING; 88036.D8SZH7; -.
DR   EnsemblPlants; EFJ10217; EFJ10217; SELMODRAFT_447445.
DR   Gramene; EFJ10217; EFJ10217; SELMODRAFT_447445.
DR   KEGG; smo:SELMODRAFT_447445; -.
DR   eggNOG; ENOG502QQM5; Eukaryota.
DR   HOGENOM; CLU_015099_1_0_1; -.
DR   InParanoid; D8SZH7; -.
DR   OMA; LEEPCLA; -.
DR   Proteomes; UP000001514; Unassembled WGS sequence.
DR   GO; GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.
DR   GO; GO:0030246; F:carbohydrate binding; IEA:InterPro.
DR   GO; GO:0102210; F:rhamnogalacturonan endolyase activity; IEA:UniProtKB-EC.
DR   GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro.
DR   GO; GO:1901575; P:organic substance catabolic process; IEA:UniProt.
DR   CDD; cd10317; RGL4_C; 1.
DR   CDD; cd10316; RGL4_M; 1.
DR   CDD; cd10320; RGL4_N; 1.
DR   Gene3D; 2.70.98.10; -; 1.
DR   Gene3D; 2.60.40.1120; Carboxypeptidase-like, regulatory domain; 1.
DR   Gene3D; 2.60.120.260; Galactose-binding domain-like; 1.
DR   InterPro; IPR013784; Carb-bd-like_fold.
DR   InterPro; IPR011013; Gal_mutarotase_sf_dom.
DR   InterPro; IPR008979; Galactose-bd-like_sf.
DR   InterPro; IPR014718; GH-type_carb-bd.
DR   InterPro; IPR029413; RG-lyase_II.
DR   InterPro; IPR029411; RG-lyase_III.
DR   InterPro; IPR010325; Rhamnogal_lyase.
DR   PANTHER; PTHR32018:SF1; RHAMNOGALACTURONAN ENDOLYASE; 1.
DR   PANTHER; PTHR32018; RHAMNOGALACTURONATE LYASE FAMILY PROTEIN; 1.
DR   Pfam; PF14683; CBM-like; 1.
DR   Pfam; PF14686; fn3_3; 1.
DR   Pfam; PF06045; Rhamnogal_lyase; 1.
DR   SUPFAM; SSF74650; Galactose mutarotase-like; 1.
DR   SUPFAM; SSF49785; Galactose-binding domain-like; 1.
DR   SUPFAM; SSF49452; Starch-binding domain-like; 1.
PE   3: Inferred from homology;
KW   Cell wall biogenesis/degradation {ECO:0000256|ARBA:ARBA00023316};
KW   Lyase {ECO:0000256|ARBA:ARBA00023239};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001514};
KW   Secreted {ECO:0000256|ARBA:ARBA00022525}.
FT   DOMAIN          424..492
FT                   /note="Rhamnogalacturonan lyase"
FT                   /evidence="ECO:0000259|Pfam:PF14686"
FT   DOMAIN          508..684
FT                   /note="Rhamnogalacturonan lyase"
FT                   /evidence="ECO:0000259|Pfam:PF14683"
SQ   SEQUENCE   690 AA;  78700 MW;  229956FBB3D320F2 CRC64;
     MKTLVCRLEE RIRAWILRPW MRSLALAHDR RREVKASSLS RPRAGGIQNG LHHFRVLGNC
     YPFGRKKKRM SCNRVPGGGC QGPDVRLIDR GSHVILDNGI VEVTISRPGG IVTGIRFGGI
     DNLLEIHNKE TNRGYWDLNW NEPGGKDTFD VDGDKVELSF LRPYIPGTKM LPLNIDKRFV
     LLRGNTGFYT YGIYERPAGW PDFNLNQTRV TFKLRKDRFQ FMAMADTKQR PMPSPDDRLQ
     QHCTQLAYPE AVLIHTSQNP EFRGEVDDKY QYSCDNRENR VHGWISCNPA LGFWIITASD
     EFRNGGPLKQ NLTSHVGPTC LAMFHSAHYA GAALCPEFRN GEAWTKVFGP VFIYLNVAAT
     YAQVNCRYLW EDAKQQMVTE VGSWPVPWPV SPDFPKSMDR GSISGRLLVK DSFKSPTPFA
     GCYAFLGLAS PGDKGSWQTE SKGYQFWAQA DAEGYFHVKH VRAGKYNLYG WVPGVLGDYK
     KEGSIDVYPG SWLQLGHMVY EPPRDGPTVW EIGIPDRTAA EFHIPDPNPK YINRLFVNHS
     ERYRHYGLWE RYSELYPEGD LVFTIGKSDW RSDWFFAHTC RIEKDGSVKP STWQIRFHLP
     CVQGGVYKLR LAFAASNNAA IQVRVNDPNT RTTVFDTMQF GKDNAIARHG IHGLYHLWNV
     DVRSELFRAG ENILYLTQRK PTSPHCGGYV
//
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