ID D8TC03_SELML Unreviewed; 1292 AA.
AC D8TC03;
DT 05-OCT-2010, integrated into UniProtKB/TrEMBL.
DT 05-OCT-2010, sequence version 1.
DT 24-JAN-2024, entry version 67.
DE RecName: Full=SWIRM domain-containing protein {ECO:0000259|PROSITE:PS50934};
GN ORFNames=SELMODRAFT_449015 {ECO:0000313|EMBL:EFJ05791.1};
OS Selaginella moellendorffii (Spikemoss).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella.
OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514};
RN [1] {ECO:0000313|EMBL:EFJ05791.1, ECO:0000313|Proteomes:UP000001514}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=21551031; DOI=10.1126/science.1203810;
RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M.,
RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W.,
RA Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D.,
RA Chapple C., Cheng C., Correa L.G., Dacre M., DeBarry J., Dreyer I.,
RA Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K.,
RA Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M.,
RA Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G.,
RA Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y.,
RA Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K.,
RA Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R.,
RA Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B.,
RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y.,
RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N.,
RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N.,
RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S.,
RA Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q.,
RA Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J.,
RA Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V.;
RT "The Selaginella genome identifies genetic changes associated with the
RT evolution of vascular plants.";
RL Science 332:960-963(2011).
CC -!- SIMILARITY: Belongs to the flavin monoamine oxidase family.
CC {ECO:0000256|ARBA:ARBA00005995}.
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DR EMBL; GL377714; EFJ05791.1; -; Genomic_DNA.
DR RefSeq; XP_002993151.1; XM_002993105.1.
DR SMR; D8TC03; -.
DR STRING; 88036.D8TC03; -.
DR EnsemblPlants; EFJ05791; EFJ05791; SELMODRAFT_449015.
DR Gramene; EFJ05791; EFJ05791; SELMODRAFT_449015.
DR KEGG; smo:SELMODRAFT_449015; -.
DR eggNOG; KOG0029; Eukaryota.
DR HOGENOM; CLU_001527_1_0_1; -.
DR InParanoid; D8TC03; -.
DR OMA; IVISSNC; -.
DR OrthoDB; 472576at2759; -.
DR Proteomes; UP000001514; Unassembled WGS sequence.
DR GO; GO:0005694; C:chromosome; IEA:InterPro.
DR GO; GO:0016491; F:oxidoreductase activity; IBA:GO_Central.
DR GO; GO:0006325; P:chromatin organization; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR Gene3D; 3.90.660.10; -; 1.
DR Gene3D; 3.50.50.60; FAD/NAD(P)-binding domain; 2.
DR Gene3D; 1.10.1740.100; Set2, Rpb1 interacting domain; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR002937; Amino_oxidase.
DR InterPro; IPR036188; FAD/NAD-bd_sf.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR013257; SRI.
DR InterPro; IPR038190; SRI_sf.
DR InterPro; IPR007526; SWIRM.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR PANTHER; PTHR10742; FLAVIN MONOAMINE OXIDASE; 1.
DR PANTHER; PTHR10742:SF410; LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3; 1.
DR Pfam; PF01593; Amino_oxidase; 1.
DR Pfam; PF08236; SRI; 1.
DR Pfam; PF04433; SWIRM; 1.
DR SUPFAM; SSF54373; FAD-linked reductases, C-terminal domain; 1.
DR SUPFAM; SSF51905; FAD/NAD(P)-binding domain; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR PROSITE; PS50934; SWIRM; 1.
PE 3: Inferred from homology;
KW Chromatin regulator {ECO:0000256|ARBA:ARBA00022853};
KW Reference proteome {ECO:0000313|Proteomes:UP000001514}.
FT DOMAIN 135..235
FT /note="SWIRM"
FT /evidence="ECO:0000259|PROSITE:PS50934"
FT REGION 1..27
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 264..286
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 987..1030
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 987..1002
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1009..1025
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1292 AA; 141771 MW; E09B31DC9880F21B CRC64;
MMEEHECACG ESVAAASPDE AGDDAAPALE SISGGKVMEQ RLSSATVVFE GKVETRMDGD
VVVAASDSVK SEEGSDGRQP DEVKLEELEE SVLPVLKATQ PLREYKKRKR DVSGELDFEV
LMGSADKMPA QQECEAFPAV SVGLKPDQLS STERVRFKEV VKRKTKVAEY LECRNFILQL
WTKDVRRHLT VADCGVSEVA QLNEPPRAGL VRNIHEFLDY HGYINTGIVK RVKFEEQQGE
EFREGTGDEP LGFIHKVQEN GHIPASDATT PMDIDGSADV SSDREKGHDR KRIIVVGGGP
AGLVAARHMQ RMNFDVMILE ARDRVGGRVY TDRSTFSVPV DLGASIITGV EADAERRADP
SALICRQLGL GLTSVRGDCP LYDSVTGRKV PADIDAALED KLNTLLDDTI TIVAQNSDAA
LRMSLEEGLE QALSKRKGLH IPKSTILDQS QVTVADVTQA KITELASSAP DPSTEDGVLH
QQDGLSCSLE LERRIMDWHF ANLEYGCAAQ LEKVSLAYWN QDDTYGGFAG PHCMIKGGYG
TLVEALAQGL DVKLGRVVTE VSYTAKDVHI KTGKKKQVRV KTEDGEVHMC DAVLVTVPLG
CLKAQSIKFV PQLPSWKSGS ISRLGFGTLN KVVLEFETVF WDENVDIFGA TGEDTESRGR
CFMFWNLVKT VGAPVLIALV VGKAAVDDAK SGSSFLVSHA VEILRKLYGR TKVPEPKTFK
VTDWGSDQYS RGAYSYVAVG ASGEDYDILG RPVEDCVFFA GEATCKEHPD TVGGAILSGL
KEAVRILDIL ENRGDLIEEA EEMTAAQRQP DSERNEVRDM QIRIQAAEYA NNKYREGNSL
DGEDEPFTRA DLLKDMFRNA KTTAGKLFLA KEMTGLSASS VKGFVGTKTG LSILNSWILD
SMGKDGTQLL RLCLRLLLTV ATDMLAVRLS GIGRTIKEKV CQHTSRDIRA LAGQLVAMWC
EFYRREKAML KQFRKNVVKK EDDTAVSSAP ACSSSQRDHS HGNAEQATSR HEQKNGASSS
EGPVEFESGE NEPLISDLEA AARARAEACQ AAALAAAEAY ANAEAERTAL PEPPKILSFH
KFAKREKVVT KDVPVDLKRR KFPEVLNRRP SDGSRRLSGL PLDLSGSCSN ASSPNVVLQG
EGNSQVMGEY LGPQHQEQVI DAEMVGKGTA NFETFSVGDR LRDDRKRRGF PSESYEVKDR
CTPDQIKKAL SEYVVHLLTP LYKTRKIQKD AFKAIAKKTT MKVMERDGIR DTDVNISDYL
NGKRKNKIRE LVDKFVEKHL AETKQSAGSP GN
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