ID E0CQ27_VITVI Unreviewed; 397 AA.
AC E0CQ27;
DT 05-OCT-2010, integrated into UniProtKB/TrEMBL.
DT 05-OCT-2010, sequence version 1.
DT 27-MAR-2024, entry version 72.
DE RecName: Full=COP9 signalosome complex subunit 4 {ECO:0000256|ARBA:ARBA00014881};
GN OrderedLocusNames=VIT_18s0001g12250 {ECO:0000313|EMBL:CBI19673.3};
OS Vitis vinifera (Grape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; Vitales; Vitaceae; Viteae; Vitis.
OX NCBI_TaxID=29760 {ECO:0000313|EMBL:CBI19673.3, ECO:0000313|Proteomes:UP000009183};
RN [1] {ECO:0000313|Proteomes:UP000009183}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183};
RX PubMed=17721507; DOI=10.1038/nature06148;
RG The French-Italian Public Consortium for Grapevine Genome Characterization.;
RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A.,
RA Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F.,
RA Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.,
RA Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E.,
RA Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M.,
RA Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M.,
RA Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E.,
RA Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M.,
RA Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G.,
RA Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F.,
RA Wincker P.;
RT "The grapevine genome sequence suggests ancestral hexaploidization in major
RT angiosperm phyla.";
RL Nature 449:463-467(2007).
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
CC Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the CSN4 family.
CC {ECO:0000256|ARBA:ARBA00010417}.
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DR EMBL; FN595227; CBI19673.3; -; Genomic_DNA.
DR RefSeq; XP_002283011.1; XM_002282975.3.
DR AlphaFoldDB; E0CQ27; -.
DR STRING; 29760.E0CQ27; -.
DR PaxDb; 29760-VIT_18s0001g12250-t01; -.
DR EnsemblPlants; Vitvi18g00938_t001; Vitvi18g00938_P001; Vitvi18g00938.
DR GeneID; 100254062; -.
DR Gramene; Vitvi18g00938_t001; Vitvi18g00938_P001; Vitvi18g00938.
DR KEGG; vvi:100254062; -.
DR eggNOG; KOG1497; Eukaryota.
DR HOGENOM; CLU_028132_1_0_1; -.
DR InParanoid; E0CQ27; -.
DR OMA; KNIMHTV; -.
DR OrthoDB; 5476188at2759; -.
DR Proteomes; UP000009183; Chromosome 18.
DR ExpressionAtlas; E0CQ27; baseline and differential.
DR GO; GO:0008180; C:COP9 signalosome; IBA:GO_Central.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR000717; PCI_dom.
DR InterPro; IPR040134; PSMD12/CSN4.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR10855; 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4; 1.
DR PANTHER; PTHR10855:SF2; COP9 SIGNALOSOME COMPLEX SUBUNIT 4; 1.
DR Pfam; PF01399; PCI; 1.
DR SMART; SM00088; PINT; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR PROSITE; PS50250; PCI; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000009183}.
FT DOMAIN 192..365
FT /note="PCI"
FT /evidence="ECO:0000259|PROSITE:PS50250"
SQ SEQUENCE 397 AA; 45179 MW; AB35079EE73D7727 CRC64;
MDSAFASASA ISDQRQKIEQ YKLILSSVIT SNDIAQARKF IDHMLSDDVP LVVSRQLLQI
FAQELGRLKP EAQKEIAHYT LTQIQPRCVS FEEQVLVIRE KLAELYESEQ QWSKAAQMLS
GIDLDSTMRV IDDTFRLSKC VQIARLYLED DDAVNAEAFI NKASFLVSNS QHEVLNLQYK
VCYARILDLK RKFLEAALRY YDISQIEKRQ IGDELIDEEA LEQALSAAVT CTILAAAGPQ
RSRVLATLYK DERCSKLKIY PILQKVYLER ILRKPEIDAF AEELKAHQKA LLPDNFTVLD
RAMIEHNLLS ASKLYTNISF DELGTLLGIA PQKAEKIASR MIYEDRMRGS IDQVEAVIHF
EDDTEELQQW DQQIVGLCQA LNDVLDSMAK KGLSIPV
//
