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Database: UniProt
Entry: E1VR42_9GAMM
LinkDB: E1VR42_9GAMM
Original site: E1VR42_9GAMM 
ID   E1VR42_9GAMM            Unreviewed;       390 AA.
AC   E1VR42;
DT   30-NOV-2010, integrated into UniProtKB/TrEMBL.
DT   30-NOV-2010, sequence version 1.
DT   24-JAN-2024, entry version 67.
DE   SubName: Full=Heme D1 biosynthesis protein {ECO:0000313|EMBL:CBL47284.1};
GN   Name=nirJ {ECO:0000313|EMBL:CBL47284.1};
GN   ORFNames=HDN1F_37010 {ECO:0000313|EMBL:CBL47284.1};
OS   gamma proteobacterium HdN1.
OC   Bacteria; Pseudomonadota; Gammaproteobacteria.
OX   NCBI_TaxID=83406 {ECO:0000313|EMBL:CBL47284.1, ECO:0000313|Proteomes:UP000002677};
RN   [1] {ECO:0000313|EMBL:CBL47284.1, ECO:0000313|Proteomes:UP000002677}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=HdN1 {ECO:0000313|Proteomes:UP000002677};
RA   Widdel F., Rabus R., Grundmann O., Werner I., Schreiber F., Ehrenreich P.,
RA   Behrends A., Wilkes H., Kube M., Reinhardt R., Zedelius J.;
RT   "Alkane degradation by a new type of denitrifying bacterium with possible
RT   involvement of the electron acceptor in substrate activation.";
RL   Environ. Microbiol. 0:0-0(2010).
CC   -!- COFACTOR:
CC       Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883;
CC         Evidence={ECO:0000256|ARBA:ARBA00001966};
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DR   EMBL; FP929140; CBL47284.1; -; Genomic_DNA.
DR   AlphaFoldDB; E1VR42; -.
DR   STRING; 83406.HDN1F_37010; -.
DR   KEGG; gpb:HDN1F_37010; -.
DR   eggNOG; COG0535; Bacteria.
DR   HOGENOM; CLU_009273_4_0_6; -.
DR   OrthoDB; 9792276at2; -.
DR   Proteomes; UP000002677; Chromosome.
DR   GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:InterPro.
DR   GO; GO:0003824; F:catalytic activity; IEA:InterPro.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   CDD; cd01335; Radical_SAM; 1.
DR   CDD; cd21123; SPASM_MftC-like; 1.
DR   Gene3D; 3.20.20.70; Aldolase class I; 1.
DR   InterPro; IPR023885; 4Fe4S-binding_SPASM_dom.
DR   InterPro; IPR013785; Aldolase_TIM.
DR   InterPro; IPR023992; HemeD1_Synth_NirJ.
DR   InterPro; IPR017200; PqqE-like.
DR   InterPro; IPR007197; rSAM.
DR   NCBIfam; TIGR04085; rSAM_more_4Fe4S; 1.
DR   NCBIfam; TIGR04051; rSAM_NirJ; 1.
DR   PANTHER; PTHR11228:SF7; ANTILISTERIAL BACTERIOCIN SUBTILOSIN BIOSYNTHESIS PROTEIN ALBA; 1.
DR   PANTHER; PTHR11228; RADICAL SAM DOMAIN PROTEIN; 1.
DR   Pfam; PF13353; Fer4_12; 1.
DR   Pfam; PF04055; Radical_SAM; 1.
DR   PIRSF; PIRSF037420; PQQ_syn_pqqE; 1.
DR   SFLD; SFLDG01072; dehydrogenase_like; 1.
DR   SFLD; SFLDF00393; heme_D1_biosynthesis_(NirJ-lik; 1.
DR   SUPFAM; SSF102114; Radical SAM enzymes; 1.
DR   PROSITE; PS51918; RADICAL_SAM; 1.
PE   4: Predicted;
KW   4Fe-4S {ECO:0000256|ARBA:ARBA00022485};
KW   Iron {ECO:0000256|ARBA:ARBA00023004};
KW   Iron-sulfur {ECO:0000256|ARBA:ARBA00023014};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   Reference proteome {ECO:0000313|Proteomes:UP000002677};
KW   S-adenosyl-L-methionine {ECO:0000256|ARBA:ARBA00022691}.
FT   DOMAIN          22..236
FT                   /note="Radical SAM core"
FT                   /evidence="ECO:0000259|PROSITE:PS51918"
SQ   SEQUENCE   390 AA;  44152 MW;  878CE7F9A214EEF9 CRC64;
     MFRMTQFLQE ITQPTPVAPR RNPPGPVVIW NLIRRCNLTC KHCYSISADI DFPDELSKEE
     VFTVMDDLKQ FRVPALILSG GEPLMRPDIF EIAERAKKMG FYVGLSSNGT LITEQNIDQI
     VAAGFDYVGV SLDGIGATHD KFRQMDGAFD LSMKGVELCR RNGIRVGLRF TMTQANCHEL
     VPMLDLLERE DIDKFYFSHL NYAGRGHRNR KTDTVHKQTR EAMGLLMERC WSLIERGQPK
     EFVTGNNDAD GPYLLKWVEK NFPEHAAHIQ GKLEQWGGNA SGVNIANIDN TGVVHPDTMW
     WHYALGNVRK RPFSEIWKDL SDPVMAGLKQ HPRPVTGRCG ECQYLSICNG NTRVRAMQTA
     GNVWAEDPAC YLDDVEIGLV AREIPLVRVN
//
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