ID E1VR42_9GAMM Unreviewed; 390 AA.
AC E1VR42;
DT 30-NOV-2010, integrated into UniProtKB/TrEMBL.
DT 30-NOV-2010, sequence version 1.
DT 24-JAN-2024, entry version 67.
DE SubName: Full=Heme D1 biosynthesis protein {ECO:0000313|EMBL:CBL47284.1};
GN Name=nirJ {ECO:0000313|EMBL:CBL47284.1};
GN ORFNames=HDN1F_37010 {ECO:0000313|EMBL:CBL47284.1};
OS gamma proteobacterium HdN1.
OC Bacteria; Pseudomonadota; Gammaproteobacteria.
OX NCBI_TaxID=83406 {ECO:0000313|EMBL:CBL47284.1, ECO:0000313|Proteomes:UP000002677};
RN [1] {ECO:0000313|EMBL:CBL47284.1, ECO:0000313|Proteomes:UP000002677}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=HdN1 {ECO:0000313|Proteomes:UP000002677};
RA Widdel F., Rabus R., Grundmann O., Werner I., Schreiber F., Ehrenreich P.,
RA Behrends A., Wilkes H., Kube M., Reinhardt R., Zedelius J.;
RT "Alkane degradation by a new type of denitrifying bacterium with possible
RT involvement of the electron acceptor in substrate activation.";
RL Environ. Microbiol. 0:0-0(2010).
CC -!- COFACTOR:
CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883;
CC Evidence={ECO:0000256|ARBA:ARBA00001966};
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DR EMBL; FP929140; CBL47284.1; -; Genomic_DNA.
DR AlphaFoldDB; E1VR42; -.
DR STRING; 83406.HDN1F_37010; -.
DR KEGG; gpb:HDN1F_37010; -.
DR eggNOG; COG0535; Bacteria.
DR HOGENOM; CLU_009273_4_0_6; -.
DR OrthoDB; 9792276at2; -.
DR Proteomes; UP000002677; Chromosome.
DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:InterPro.
DR GO; GO:0003824; F:catalytic activity; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd01335; Radical_SAM; 1.
DR CDD; cd21123; SPASM_MftC-like; 1.
DR Gene3D; 3.20.20.70; Aldolase class I; 1.
DR InterPro; IPR023885; 4Fe4S-binding_SPASM_dom.
DR InterPro; IPR013785; Aldolase_TIM.
DR InterPro; IPR023992; HemeD1_Synth_NirJ.
DR InterPro; IPR017200; PqqE-like.
DR InterPro; IPR007197; rSAM.
DR NCBIfam; TIGR04085; rSAM_more_4Fe4S; 1.
DR NCBIfam; TIGR04051; rSAM_NirJ; 1.
DR PANTHER; PTHR11228:SF7; ANTILISTERIAL BACTERIOCIN SUBTILOSIN BIOSYNTHESIS PROTEIN ALBA; 1.
DR PANTHER; PTHR11228; RADICAL SAM DOMAIN PROTEIN; 1.
DR Pfam; PF13353; Fer4_12; 1.
DR Pfam; PF04055; Radical_SAM; 1.
DR PIRSF; PIRSF037420; PQQ_syn_pqqE; 1.
DR SFLD; SFLDG01072; dehydrogenase_like; 1.
DR SFLD; SFLDF00393; heme_D1_biosynthesis_(NirJ-lik; 1.
DR SUPFAM; SSF102114; Radical SAM enzymes; 1.
DR PROSITE; PS51918; RADICAL_SAM; 1.
PE 4: Predicted;
KW 4Fe-4S {ECO:0000256|ARBA:ARBA00022485};
KW Iron {ECO:0000256|ARBA:ARBA00023004};
KW Iron-sulfur {ECO:0000256|ARBA:ARBA00023014};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000002677};
KW S-adenosyl-L-methionine {ECO:0000256|ARBA:ARBA00022691}.
FT DOMAIN 22..236
FT /note="Radical SAM core"
FT /evidence="ECO:0000259|PROSITE:PS51918"
SQ SEQUENCE 390 AA; 44152 MW; 878CE7F9A214EEF9 CRC64;
MFRMTQFLQE ITQPTPVAPR RNPPGPVVIW NLIRRCNLTC KHCYSISADI DFPDELSKEE
VFTVMDDLKQ FRVPALILSG GEPLMRPDIF EIAERAKKMG FYVGLSSNGT LITEQNIDQI
VAAGFDYVGV SLDGIGATHD KFRQMDGAFD LSMKGVELCR RNGIRVGLRF TMTQANCHEL
VPMLDLLERE DIDKFYFSHL NYAGRGHRNR KTDTVHKQTR EAMGLLMERC WSLIERGQPK
EFVTGNNDAD GPYLLKWVEK NFPEHAAHIQ GKLEQWGGNA SGVNIANIDN TGVVHPDTMW
WHYALGNVRK RPFSEIWKDL SDPVMAGLKQ HPRPVTGRCG ECQYLSICNG NTRVRAMQTA
GNVWAEDPAC YLDDVEIGLV AREIPLVRVN
//