ID E4T747_PALPW Unreviewed; 385 AA.
AC E4T747;
DT 08-FEB-2011, integrated into UniProtKB/TrEMBL.
DT 08-FEB-2011, sequence version 1.
DT 27-MAR-2024, entry version 58.
DE RecName: Full=DNA-directed DNA polymerase {ECO:0000256|ARBA:ARBA00012417};
DE EC=2.7.7.7 {ECO:0000256|ARBA:ARBA00012417};
GN OrderedLocusNames=Palpr_2409 {ECO:0000313|EMBL:ADQ80541.1};
OS Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).
OC Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Paludibacteraceae;
OC Paludibacter.
OX NCBI_TaxID=694427 {ECO:0000313|EMBL:ADQ80541.1, ECO:0000313|Proteomes:UP000008718};
RN [1]
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=WB4;
RG US DOE Joint Genome Institute (JGI-PGF);
RA Lucas S., Copeland A., Lapidus A., Bruce D., Goodwin L., Pitluck S.,
RA Kyrpides N., Mavromatis K., Ivanova N., Munk A.C., Brettin T., Detter J.C.,
RA Han C., Tapia R., Land M., Hauser L., Markowitz V., Cheng J.-F.,
RA Hugenholtz P., Woyke T., Wu D., Gronow S., Wellnitz S., Brambilla E.,
RA Klenk H.-P., Eisen J.A.;
RT "The complete genome of Paludibacter propionicigenes DSM 17365.";
RL Submitted (NOV-2010) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:ADQ80541.1, ECO:0000313|Proteomes:UP000008718}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 17365 / JCM 13257 / WB4
RC {ECO:0000313|Proteomes:UP000008718};
RX PubMed=21475585; DOI=10.4056/sigs.1503846;
RA Gronow S., Munk C., Lapidus A., Nolan M., Lucas S., Hammon N.,
RA Deshpande S., Cheng J.F., Tapia R., Han C., Goodwin L., Pitluck S.,
RA Liolios K., Ivanova N., Mavromatis K., Mikhailova N., Pati A., Chen A.,
RA Palaniappan K., Land M., Hauser L., Chang Y.J., Jeffries C.D.,
RA Brambilla E., Rohde M., Goker M., Detter J.C., Woyke T., Bristow J.,
RA Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P.;
RT "Complete genome sequence of Paludibacter propionicigenes type strain
RT (WB4).";
RL Stand. Genomic Sci. 4:36-44(2011).
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DR EMBL; CP002345; ADQ80541.1; -; Genomic_DNA.
DR RefSeq; WP_013445910.1; NC_014734.1.
DR AlphaFoldDB; E4T747; -.
DR STRING; 694427.Palpr_2409; -.
DR GeneID; 78491916; -.
DR KEGG; ppn:Palpr_2409; -.
DR eggNOG; COG0470; Bacteria.
DR HOGENOM; CLU_006229_4_2_10; -.
DR OrthoDB; 9811073at2; -.
DR Proteomes; UP000008718; Chromosome.
DR GO; GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.
DR GO; GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR004622; DNA_pol_HolB.
DR InterPro; IPR027417; P-loop_NTPase.
DR NCBIfam; TIGR00678; holB; 1.
DR PANTHER; PTHR11669:SF0; PROTEIN STICHEL; 1.
DR PANTHER; PTHR11669; REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT; 1.
DR Pfam; PF13177; DNA_pol3_delta2; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW DNA-directed DNA polymerase {ECO:0000256|ARBA:ARBA00022932};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Reference proteome {ECO:0000313|Proteomes:UP000008718};
KW Transferase {ECO:0000256|ARBA:ARBA00022932}.
FT COILED 212..239
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 385 AA; 44397 MW; 7D1D5F06DFBCEC1D CRC64;
MLFSQIIGQQ DIKKRLIRTV TEQRIPHAQL LRGPEGIGKL ALAVAYAQYI CCENRSATDS
CGVCPACVKY KKLAHPDLHF VYPVIKPTGK NTVVCDDFIA EFREMILENS YFGLNDWYSK
ISGDAKQGLI YSNESEEIIR KLSLKTYESE YKIMIIWLPE KMHTTCANKL LKILEEPPEK
TVFLMVTNTP DEIITTILSR TQHIHVPRLS ENEIIQALLR NEELEIEQAE AEYAAHIANG
SYLNALAVLS EGDENKVNFD RFVMIMRLAW QVGNKKDHAS LKTLRKWSDD MAAASIGRER
QKNFLSYAQR MIRENFIRNM QQPDLNYLTS GEADFSQRFS PFINERNVEE LMNEFALAER
QIEQNVNAKM IFFDLTLKVI MLLKK
//
