ID E6MM85_9BACT Unreviewed; 539 AA.
AC E6MM85;
DT 08-MAR-2011, integrated into UniProtKB/TrEMBL.
DT 08-MAR-2011, sequence version 1.
DT 27-MAR-2024, entry version 62.
DE SubName: Full=S1 RNA binding domain protein {ECO:0000313|EMBL:EFV05259.1};
DE EC=3.1.26.- {ECO:0000313|EMBL:EFV05259.1};
GN Name=rng {ECO:0000313|EMBL:EFV05259.1};
GN ORFNames=HMPREF9420_0603 {ECO:0000313|EMBL:EFV05259.1};
OS Segatella salivae DSM 15606.
OC Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae;
OC Segatella.
OX NCBI_TaxID=888832 {ECO:0000313|EMBL:EFV05259.1, ECO:0000313|Proteomes:UP000003874};
RN [1] {ECO:0000313|EMBL:EFV05259.1, ECO:0000313|Proteomes:UP000003874}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 15606 {ECO:0000313|EMBL:EFV05259.1,
RC ECO:0000313|Proteomes:UP000003874};
RA Muzny D., Qin X., Deng J., Jiang H., Liu Y., Qu J., Song X.-Z., Zhang L.,
RA Thornton R., Coyle M., Francisco L., Jackson L., Javaid M., Korchina V.,
RA Kovar C., Mata R., Mathew T., Ngo R., Nguyen L., Nguyen N., Okwuonu G.,
RA Ongeri F., Pham C., Simmons D., Wilczek-Boney K., Hale W., Jakkamsetti A.,
RA Pham P., Ruth R., San Lucas F., Warren J., Zhang J., Zhao Z., Zhou C.,
RA Zhu D., Lee S., Bess C., Blankenburg K., Forbes L., Fu Q., Gubbala S.,
RA Hirani K., Jayaseelan J.C., Lara F., Munidasa M., Palculict T., Patil S.,
RA Pu L.-L., Saada N., Tang L., Weissenberger G., Zhu Y., Hemphill L.,
RA Shang Y., Youmans B., Ayvaz T., Ross M., Santibanez J., Aqrawi P.,
RA Gross S., Joshi V., Fowler G., Nazareth L., Reid J., Worley K.,
RA Petrosino J., Highlander S., Gibbs R.;
RL Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases.
CC -!- COFACTOR:
CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
CC Evidence={ECO:0000256|ARBA:ARBA00001946};
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EFV05259.1}.
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DR EMBL; AEQO01000065; EFV05259.1; -; Genomic_DNA.
DR AlphaFoldDB; E6MM85; -.
DR STRING; 888832.HMPREF9420_0603; -.
DR eggNOG; COG1530; Bacteria.
DR HOGENOM; CLU_003468_5_3_10; -.
DR Proteomes; UP000003874; Unassembled WGS sequence.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0004540; F:RNA nuclease activity; IEA:InterPro.
DR GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR CDD; cd04453; S1_RNase_E; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR Gene3D; 3.40.1260.20; Ribonuclease E, catalytic domain; 1.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR019307; RNA-bd_AU-1/RNase_E/G.
DR InterPro; IPR004659; RNase_E/G.
DR InterPro; IPR003029; S1_domain.
DR NCBIfam; TIGR00757; RNaseEG; 1.
DR PANTHER; PTHR30001; RIBONUCLEASE; 1.
DR PANTHER; PTHR30001:SF0; RIBONUCLEASE G; 1.
DR Pfam; PF10150; RNase_E_G; 1.
DR SMART; SM00316; S1; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
PE 4: Predicted;
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000313|EMBL:EFV05259.1};
KW Magnesium {ECO:0000256|ARBA:ARBA00022842};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000003874};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884}.
FT DOMAIN 52..156
FT /note="S1 motif"
FT /evidence="ECO:0000259|SMART:SM00316"
SQ SEQUENCE 539 AA; 61595 MW; FC9D0DA69AABC005 CRC64;
MTCPFIVKKL SKDKTMTSEV VIDVREKEIS IALLEDKNLV EYQNEPRQAS FSVGNIYAAK
VKKLMPGLNA CFVDVGYERD AFLHYLDLGS QFNSYAKYLK QVNSDRKKLY PFSKAQRVPD
LKKDGSVQQV LTVGQEVLVQ IVKEPISTKG PRLTGELSFA GRFIVLIPFG DKVSVSSKIK
SGEERARLKQ LIYSIKPKNC GVIVRTVAEG KRVAELDTEM KVLNKRWEDA ILKTQKQQKR
PQLVFEETGR AIAMLRDLFN PSFENIYVNN EEVYNEVKHY LTLIAPEKAG IVKLYKGKVP
IFDNFNVTKQ IKSSFGKTIN YKHGAYLIIE HTEALHVVDV NSGNRTKAQN GQEANALDVN
LGAADEIARQ LRLRDMGGII VVDFIDMNLA EDRQMLYERM CKNMQKDRAR HNILPLSKFG
LMQITRQRVR PAMDVNVEET CPTCNGTGKI KSSILFTDQL ERKIDRLVNK IGIAKFYLHV
HPYVAAYINQ GLISLRRKWQ FKYGFGVHII PSQKLAFLQY EFYDANGEFI DMKEEIETK
//
