ID E9FYB9_DAPPU Unreviewed; 737 AA.
AC E9FYB9;
DT 05-APR-2011, integrated into UniProtKB/TrEMBL.
DT 05-APR-2011, sequence version 1.
DT 27-MAR-2024, entry version 47.
DE RecName: Full=Nuclear pore complex protein Nup88 {ECO:0008006|Google:ProtNLM};
GN ORFNames=DAPPUDRAFT_311923 {ECO:0000313|EMBL:EFX87505.1};
OS Daphnia pulex (Water flea).
OC Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda;
OC Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia.
OX NCBI_TaxID=6669 {ECO:0000313|EMBL:EFX87505.1, ECO:0000313|Proteomes:UP000000305};
RN [1] {ECO:0000313|EMBL:EFX87505.1, ECO:0000313|Proteomes:UP000000305}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=21292972; DOI=10.1126/science.1197761;
RA Colbourne J.K., Pfrender M.E., Gilbert D., Thomas W.K., Tucker A.,
RA Oakley T.H., Tokishita S., Aerts A., Arnold G.J., Basu M.K., Bauer D.J.,
RA Caceres C.E., Carmel L., Casola C., Choi J.H., Detter J.C., Dong Q.,
RA Dusheyko S., Eads B.D., Frohlich T., Geiler-Samerotte K.A., Gerlach D.,
RA Hatcher P., Jogdeo S., Krijgsveld J., Kriventseva E.V., Kultz D.,
RA Laforsch C., Lindquist E., Lopez J., Manak J.R., Muller J., Pangilinan J.,
RA Patwardhan R.P., Pitluck S., Pritham E.J., Rechtsteiner A., Rho M.,
RA Rogozin I.B., Sakarya O., Salamov A., Schaack S., Shapiro H., Shiga Y.,
RA Skalitzky C., Smith Z., Souvorov A., Sung W., Tang Z., Tsuchiya D., Tu H.,
RA Vos H., Wang M., Wolf Y.I., Yamagata H., Yamada T., Ye Y., Shaw J.R.,
RA Andrews J., Crease T.J., Tang H., Lucas S.M., Robertson H.M., Bork P.,
RA Koonin E.V., Zdobnov E.M., Grigoriev I.V., Lynch M., Boore J.L.;
RT "The ecoresponsive genome of Daphnia pulex.";
RL Science 331:555-561(2011).
CC -!- SUBCELLULAR LOCATION: Nucleus, nuclear pore complex
CC {ECO:0000256|ARBA:ARBA00004567}.
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DR EMBL; GL732527; EFX87505.1; -; Genomic_DNA.
DR AlphaFoldDB; E9FYB9; -.
DR STRING; 6669.E9FYB9; -.
DR EnsemblMetazoa; EFX87505; EFX87505; DAPPUDRAFT_311923.
DR KEGG; dpx:DAPPUDRAFT_311923; -.
DR eggNOG; KOG4460; Eukaryota.
DR HOGENOM; CLU_017144_0_0_1; -.
DR InParanoid; E9FYB9; -.
DR OMA; AYSCPIH; -.
DR PhylomeDB; E9FYB9; -.
DR Proteomes; UP000000305; Unassembled WGS sequence.
DR GO; GO:0005643; C:nuclear pore; IBA:GO_Central.
DR GO; GO:0017056; F:structural constituent of nuclear pore; IEA:InterPro.
DR GO; GO:0006406; P:mRNA export from nucleus; IBA:GO_Central.
DR GO; GO:0006606; P:protein import into nucleus; IBA:GO_Central.
DR GO; GO:0000055; P:ribosomal large subunit export from nucleus; IBA:GO_Central.
DR GO; GO:0000056; P:ribosomal small subunit export from nucleus; IBA:GO_Central.
DR InterPro; IPR019321; Nucleoporin_Nup88.
DR InterPro; IPR037700; NUP88/NUP82.
DR PANTHER; PTHR13257:SF0; NUCLEAR PORE COMPLEX PROTEIN NUP88; 1.
DR PANTHER; PTHR13257; NUCLEOPORIN NUP84-RELATED; 1.
DR Pfam; PF10168; Nup88; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW mRNA transport {ECO:0000256|ARBA:ARBA00022816};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Protein transport {ECO:0000256|ARBA:ARBA00022927};
KW Reference proteome {ECO:0000313|Proteomes:UP000000305};
KW Translocation {ECO:0000256|ARBA:ARBA00023010};
KW Transport {ECO:0000256|ARBA:ARBA00022448}.
FT REGION 686..711
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 654..681
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 737 AA; 81640 MW; 06D3F54CDE0A9F7C CRC64;
MATLSHKYLA GLNNSQFSKL IKEQKSKQTG QIKKVRSLLT TIEHYLFAWD KVDCCLLVKN
LLDADSWAED TKDSCTKSSK DRFLKVTLTD APVFQVENIQ ANLDGSLIVL SGPQGVAYVE
LPSNLPSLEA KQQGPSVKSA RSSYIDQKFL LCNSRIRIQE VKFHPGSPTN SHVVVLTSDN
CLRIYDAFNS SRPEKTIPVG PKMSQHSLHS SITSGTTFSS CLDEAVSFDF GTPFEDTRVT
VVPQKRDGVP IFLFPVYILL TNGDVYTFSC SVQSNSSRAP KISVIGPLLM QPAALDNYGG
DACSLLCLPV SPPVLVIANR TGNIHHAILL PRATIEDGDD SDHNPNIADD LESLLSKASL
TASPDVKADS VLHVTETLEL DGDILDCSES FSTEDYLDGN ESALQLRRDP ACSSRYFVVH
DYGVHGVVVP LVDTLSELAS KPDSDVDQDE TQRVMLAETV VEFILCSRMK SSAAAPPQGV
VVYPLPPTLI VMLDSADFQV ISLSRLLKPA VKAAPTTNTA KVEKEPFDAI IRRQLQRTHS
QPKLSLPPGT ELPLAEVVKL FSRSVQTLRE EYIMKQDAVR EALEKKSRLL ELHLLQQFDE
LSLIQQSKGE LTTVAHQLAE KYEDSLETQK SLTQRVEKVL YEIQRRSPFM TDAEKKMGQE
LRSLETKLQA LTQSMESLKR REQLYGAKVS QQQDRNTTSG HLSEEQKTSV NEALSLQSED
IRGLLRSLQQ VKKKLAV
//
