ID EXP29_ORYSJ Reviewed; 263 AA.
AC Q4PR39; Q0D9G0; Q5Z8N7; Q8LLJ7; Q8SB28;
DT 03-OCT-2006, integrated into UniProtKB/Swiss-Prot.
DT 03-OCT-2006, sequence version 2.
DT 24-JAN-2024, entry version 95.
DE RecName: Full=Expansin-A29;
DE AltName: Full=Alpha-expansin-29;
DE AltName: Full=OsEXP29;
DE AltName: Full=OsEXPA29;
DE AltName: Full=OsaEXPa1.14;
DE Flags: Precursor;
GN Name=EXPA29; Synonyms=EXP29;
GN OrderedLocusNames=Os06g0718100, LOC_Os06g50400;
GN ORFNames=OJ1540_H01.14, P0541C02.22;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-137.
RX PubMed=12428004; DOI=10.1104/pp.008888;
RA Lee Y., Kende H.;
RT "Expression of alpha-expansin and expansin-like genes in deepwater rice.";
RL Plant Physiol. 130:1396-1405(2002).
RN [6]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 25-259, AND TISSUE SPECIFICITY.
RC STRAIN=cv. Dongjin;
RX PubMed=16267395;
RA Shin J.-H., Jeong D.-H., Park M.C., An G.;
RT "Characterization and transcriptional expression of the alpha-expansin gene
RT family in rice.";
RL Mol. Cells 20:210-218(2005).
RN [7]
RP NOMENCLATURE.
RX PubMed=15604683; DOI=10.1007/s11103-004-0158-6;
RA Kende H., Bradford K.J., Brummell D.A., Cho H.-T., Cosgrove D.J.,
RA Fleming A.J., Gehring C., Lee Y., McQueen-Mason S.J., Rose J.K.C.,
RA Voesenek L.A.C.;
RT "Nomenclature for members of the expansin superfamily of genes and
RT proteins.";
RL Plant Mol. Biol. 55:311-314(2004).
CC -!- FUNCTION: May cause loosening and extension of plant cell walls by
CC disrupting non-covalent bonding between cellulose microfibrils and
CC matrix glucans. No enzymatic activity has been found. May be required
CC for rapid internodal elongation in deepwater rice during submergence
CC (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Secreted, cell wall {ECO:0000250}. Membrane
CC {ECO:0000250}; Peripheral membrane protein {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: Expressed in panicles and flowers.
CC {ECO:0000269|PubMed:16267395}.
CC -!- SIMILARITY: Belongs to the expansin family. Expansin A subfamily.
CC {ECO:0000305}.
CC -!- WEB RESOURCE: Name=EXPANSIN homepage;
CC URL="https://www.dept.psu.edu/biology/groups/expansins/index.htm";
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DR EMBL; AC091774; AAL79710.1; -; Genomic_DNA.
DR EMBL; AP003769; BAD61725.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF20513.1; -; Genomic_DNA.
DR EMBL; AP014962; BAS99525.1; -; Genomic_DNA.
DR EMBL; AK070133; BAG91786.1; -; mRNA.
DR EMBL; AF394562; AAM73778.1; -; Genomic_DNA.
DR EMBL; DQ061068; AAY63559.1; -; mRNA.
DR RefSeq; XP_015642522.1; XM_015787036.1.
DR AlphaFoldDB; Q4PR39; -.
DR SMR; Q4PR39; -.
DR STRING; 39947.Q4PR39; -.
DR PaxDb; 39947-Q4PR39; -.
DR EnsemblPlants; Os06t0718100-01; Os06t0718100-01; Os06g0718100.
DR GeneID; 4342086; -.
DR Gramene; Os06t0718100-01; Os06t0718100-01; Os06g0718100.
DR KEGG; osa:4342086; -.
DR eggNOG; ENOG502QVVV; Eukaryota.
DR HOGENOM; CLU_027462_0_1_1; -.
DR InParanoid; Q4PR39; -.
DR OMA; RIGVYQG; -.
DR OrthoDB; 889108at2759; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR Genevisible; Q4PR39; OS.
DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-KW.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0009653; P:anatomical structure morphogenesis; IEA:UniProt.
DR GO; GO:0009664; P:plant-type cell wall organization; IEA:InterPro.
DR CDD; cd22274; DPBB_EXPA_N; 1.
DR Gene3D; 2.60.40.760; Expansin, cellulose-binding-like domain; 1.
DR Gene3D; 2.40.40.10; RlpA-like domain; 1.
DR InterPro; IPR007118; Expan_Lol_pI.
DR InterPro; IPR002963; Expansin.
DR InterPro; IPR007112; Expansin/allergen_DPBB_dom.
DR InterPro; IPR007117; Expansin_CBD.
DR InterPro; IPR036749; Expansin_CBD_sf.
DR InterPro; IPR009009; RlpA-like_DPBB.
DR InterPro; IPR036908; RlpA-like_sf.
DR PANTHER; PTHR31867; EXPANSIN-A15; 1.
DR PANTHER; PTHR31867:SF133; EXPANSIN-A29; 1.
DR Pfam; PF03330; DPBB_1; 1.
DR Pfam; PF01357; Expansin_C; 1.
DR PRINTS; PR01226; EXPANSIN.
DR PRINTS; PR01225; EXPANSNFAMLY.
DR SMART; SM00837; DPBB_1; 1.
DR SUPFAM; SSF50685; Barwin-like endoglucanases; 1.
DR SUPFAM; SSF49590; PHL pollen allergen; 1.
DR PROSITE; PS50843; EXPANSIN_CBD; 1.
DR PROSITE; PS50842; EXPANSIN_EG45; 1.
PE 2: Evidence at transcript level;
KW Cell wall; Cell wall biogenesis/degradation; Membrane; Reference proteome;
KW Secreted; Signal.
FT SIGNAL 1..28
FT /evidence="ECO:0000255"
FT CHAIN 29..263
FT /note="Expansin-A29"
FT /id="PRO_0000252008"
FT DOMAIN 52..167
FT /note="Expansin-like EG45"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
FT DOMAIN 177..258
FT /note="Expansin-like CBD"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00078"
SQ SEQUENCE 263 AA; 28037 MW; 8C7D58FE73B7F8CF CRC64;
MARRGHVFAV VAFVSYALLA AASTTVEAFA ASGWSKGTAT FYGGSDASGT MGGACGYGNL
YTQGYGTRTA ALSTALFDDG ASCGQCYALT CDARADPRWC RAGASVTVTA TNFCPPNYAL
PSDDGGWCNP PRPHFDMAQP AWERIGVYRG GIVPVAFRRV PCRRRGGVRF TVAGRDYFEL
VLVTNVAAAG SVRSMEVRGS RRGAGWMAMS RNWGANWQSL AYLDGQGLSF RVTATDGQTI
VFAGVVPPSW RFGQTFASTQ QFM
//
