ID F0YJ66_AURAN Unreviewed; 214 AA.
AC F0YJ66;
DT 03-MAY-2011, integrated into UniProtKB/TrEMBL.
DT 03-MAY-2011, sequence version 1.
DT 27-MAR-2024, entry version 39.
DE RecName: Full=U1-type domain-containing protein {ECO:0000259|SMART:SM00451};
GN ORFNames=AURANDRAFT_31817 {ECO:0000313|EMBL:EGB04887.1};
OS Aureococcus anophagefferens (Harmful bloom alga).
OC Eukaryota; Sar; Stramenopiles; Ochrophyta; Pelagophyceae; Pelagomonadales;
OC Aureococcus.
OX NCBI_TaxID=44056 {ECO:0000313|Proteomes:UP000002729};
RN [1] {ECO:0000313|EMBL:EGB04887.1, ECO:0000313|Proteomes:UP000002729}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCMP 1984 {ECO:0000313|Proteomes:UP000002729};
RX PubMed=21368207; DOI=10.1073/pnas.1016106108;
RA Gobler C.J., Berry D.L., Dyhrman S.T., Wilhelm S.W., Salamov A.,
RA Lobanov A.V., Zhang Y., Collier J.L., Wurch L.L., Kustka A.B., Dill B.D.,
RA Shah M., VerBerkmoes N.C., Kuo A., Terry A., Pangilinan J., Lindquist E.A.,
RA Lucas S., Paulsen I.T., Hattenrath-Lehmann T.K., Talmage S.C., Walker E.A.,
RA Koch F., Burson A.M., Marcoval M.A., Tang Y.Z., Lecleir G.R., Coyne K.J.,
RA Berg G.M., Bertrand E.M., Saito M.A., Gladyshev V.N., Grigoriev I.V.;
RT "Niche of harmful alga Aureococcus anophagefferens revealed through
RT ecogenomics.";
RL Proc. Natl. Acad. Sci. U.S.A. 108:4352-4357(2011).
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DR EMBL; GL833146; EGB04887.1; -; Genomic_DNA.
DR RefSeq; XP_009040443.1; XM_009042195.1.
DR AlphaFoldDB; F0YJ66; -.
DR EnsemblProtists; EGB04887; EGB04887; AURANDRAFT_31817.
DR GeneID; 20221051; -.
DR KEGG; aaf:AURANDRAFT_31817; -.
DR eggNOG; KOG4727; Eukaryota.
DR InParanoid; F0YJ66; -.
DR OMA; VDHRRKW; -.
DR OrthoDB; 276684at2759; -.
DR Proteomes; UP000002729; Unassembled WGS sequence.
DR GO; GO:0005681; C:spliceosomal complex; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IEA:InterPro.
DR Gene3D; 3.30.160.60; Classic Zinc Finger; 1.
DR InterPro; IPR003604; Matrin/U1-like-C_Znf_C2H2.
DR InterPro; IPR040107; Snu23.
DR InterPro; IPR036236; Znf_C2H2_sf.
DR InterPro; IPR013087; Znf_C2H2_type.
DR PANTHER; PTHR45986; ZINC FINGER MATRIN-TYPE PROTEIN 2; 1.
DR PANTHER; PTHR45986:SF1; ZINC FINGER MATRIN-TYPE PROTEIN 2; 1.
DR Pfam; PF12874; zf-met; 1.
DR SMART; SM00451; ZnF_U1; 1.
DR SUPFAM; SSF57667; beta-beta-alpha zinc fingers; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000002729};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771}.
FT DOMAIN 79..113
FT /note="U1-type"
FT /evidence="ECO:0000259|SMART:SM00451"
FT REGION 153..214
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 153..190
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 214 AA; 24448 MW; 156B5C388E148937 CRC64;
MSAPKGTLNV ERRGWDKDKY EQRAKDREEY GDEYVDGKGA EAEIRDRQDW LTHRTGGFGF
DKSAGCTKVL TEPEVQKKAT GWYCDVCECL LRDSASYLDH INGKKHQRKL GYSMRVERVG
VDAVRDRFAD QTEKRAAAAA AVERHKTLDV GEEYERRLQQ RDEDDAAEKA ARREAKRQRK
EERAAADQAE DPDFDAEMNA MMGFGGFGSS KKQR
//
