ID F1ZD33_9SPHN Unreviewed; 839 AA.
AC F1ZD33;
DT 31-MAY-2011, integrated into UniProtKB/TrEMBL.
DT 31-MAY-2011, sequence version 1.
DT 24-JAN-2024, entry version 47.
DE SubName: Full=TonB-dependent receptor {ECO:0000313|EMBL:EGD57480.1};
GN ORFNames=Y88_3790 {ECO:0000313|EMBL:EGD57480.1};
OS Novosphingobium nitrogenifigens DSM 19370.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC Sphingomonadaceae; Novosphingobium.
OX NCBI_TaxID=983920 {ECO:0000313|EMBL:EGD57480.1, ECO:0000313|Proteomes:UP000004728};
RN [1] {ECO:0000313|EMBL:EGD57480.1, ECO:0000313|Proteomes:UP000004728}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 19370 {ECO:0000313|EMBL:EGD57480.1,
RC ECO:0000313|Proteomes:UP000004728};
RX PubMed=22156397; DOI=10.1128/JB.06381-11;
RA Strabala T.J., Macdonald L., Liu V., Smit A.M.;
RT "Draft Genome Sequence of Novosphingobium nitrogenifigens Y88T.";
RL J. Bacteriol. 194:201-201(2012).
CC -!- SUBCELLULAR LOCATION: Cell outer membrane
CC {ECO:0000256|ARBA:ARBA00004571}; Multi-pass membrane protein
CC {ECO:0000256|ARBA:ARBA00004571}. Membrane
CC {ECO:0000256|ARBA:ARBA00004141}; Multi-pass membrane protein
CC {ECO:0000256|ARBA:ARBA00004141}.
CC -!- SIMILARITY: Belongs to the TonB-dependent receptor family.
CC {ECO:0000256|RuleBase:RU003357}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EGD57480.1}.
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DR EMBL; AEWJ01000065; EGD57480.1; -; Genomic_DNA.
DR AlphaFoldDB; F1ZD33; -.
DR STRING; 983920.Y88_3790; -.
DR eggNOG; COG4206; Bacteria.
DR HOGENOM; CLU_008654_0_0_5; -.
DR InParanoid; F1ZD33; -.
DR Proteomes; UP000004728; Unassembled WGS sequence.
DR GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell.
DR Gene3D; 2.40.170.20; TonB-dependent receptor, beta-barrel domain; 1.
DR Gene3D; 2.170.130.10; TonB-dependent receptor, plug domain; 1.
DR InterPro; IPR012910; Plug_dom.
DR InterPro; IPR037066; Plug_dom_sf.
DR InterPro; IPR039426; TonB-dep_rcpt-like.
DR InterPro; IPR000531; TonB-dep_rcpt_b-brl.
DR InterPro; IPR036942; TonB_rcpt_b-brl_sf.
DR PANTHER; PTHR30069:SF39; BLL6183 PROTEIN; 1.
DR PANTHER; PTHR30069; TONB-DEPENDENT OUTER MEMBRANE RECEPTOR; 1.
DR Pfam; PF07715; Plug; 1.
DR Pfam; PF00593; TonB_dep_Rec; 1.
DR SUPFAM; SSF56935; Porins; 1.
PE 3: Inferred from homology;
KW Cell outer membrane {ECO:0000256|ARBA:ARBA00023237};
KW Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|RuleBase:RU003357};
KW Receptor {ECO:0000313|EMBL:EGD57480.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000004728};
KW Signal {ECO:0000256|SAM:SignalP};
KW TonB box {ECO:0000256|ARBA:ARBA00023077, ECO:0000256|RuleBase:RU003357};
KW Transmembrane {ECO:0000256|ARBA:ARBA00022692};
KW Transmembrane beta strand {ECO:0000256|ARBA:ARBA00022452};
KW Transport {ECO:0000256|ARBA:ARBA00022448}.
FT SIGNAL 1..25
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 26..839
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5003272843"
FT DOMAIN 46..158
FT /note="TonB-dependent receptor plug"
FT /evidence="ECO:0000259|Pfam:PF07715"
FT DOMAIN 316..789
FT /note="TonB-dependent receptor-like beta-barrel"
FT /evidence="ECO:0000259|Pfam:PF00593"
SQ SEQUENCE 839 AA; 88672 MW; D5CC687C764BBFFB CRC64;
MPHKSALLCA SALAGVLAIH GAAHAQETRG DQIVVTAPIA SDTVAIRDTP NNAQVLGADA
LDRQHPSNLA DLLNANLGSV TVSNGTGSPY QSDVSYRGFQ ATSLLGSPTG LSVYLDGVRM
NEAFGSIVNW DMIPLNALSQ VQVLPGSNPL FGLNTLGGSL VLATKNGADN PGATVTLQGG
SYNRRVVQAE AGGTLANRTI DWFVAGNYDA QDGYRWYTDT DVKQLYGKLR WHGTATNVEL
GVIWSDTSLN GTQALPLSML GNPKAAYTWP DNVSNNQLVI NLKADTRLSS TARLSGNVYY
RRASSHSSNS NADLGDACDE SEYDCSALAP GGTARDLYAS NPYAAGQDEA AGFVGYNGSL
PLHDYTSGIN TTVVYSNLSQ HVFGGNLLLD VDADALGLSH DLNVGGNFET ASVGYDQNTV
LARLVNYATV PEAWNTLYSS ADGFKGSNVI NGLGVSSHST SFNVFARDVV ELARGLKLSA
SVSYTHTHLS LSGTKDTYLD SSGAFTWTGA DGQTYYNPSY LGASYWDGAD GTLATATAPD
GAIAGPESAP IVGSHNWHRV NPSVGLTWNP DQAIGFFASY SEAMRAPTAI ELACADPATP
CALPTGFNGD PELKAVVAHT VEGGLRGSFG KAHHARLGWS VSAYRTLLDN DIQFIFGSSG
LGYFANVGKT ERKGVDLGVT ADFRHLHLAA SYGYVAASYR ENFTDASGDM VQPGDRITGI
PSHSFKLRAV YQPIRKVTIG GNLIVVSSQF AHGDEANLDP VVPGYTIANI DVHVLPTSRL
ELFATIANLF DRHYATFGVM GTNIYTGNDE QFRTPAQGRS VMGGLRYSFG KAVAATQLD
//
