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Database: UniProt
Entry: F4B245_DOKS4
LinkDB: F4B245_DOKS4
Original site: F4B245_DOKS4 
ID   F4B245_DOKS4            Unreviewed;       290 AA.
AC   F4B245;
DT   28-JUN-2011, integrated into UniProtKB/TrEMBL.
DT   28-JUN-2011, sequence version 1.
DT   24-JAN-2024, entry version 60.
DE   SubName: Full=Alpha-L-glutamate ligase, RimK family {ECO:0000313|EMBL:AEE19077.1};
GN   OrderedLocusNames=Krodi_1093 {ECO:0000313|EMBL:AEE19077.1};
OS   Dokdonia sp. (strain 4H-3-7-5) (Krokinobacter sp. (strain 4H-3-7-5)).
OC   Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales;
OC   Flavobacteriaceae; Dokdonia.
OX   NCBI_TaxID=983548 {ECO:0000313|EMBL:AEE19077.1, ECO:0000313|Proteomes:UP000008290};
RN   [1] {ECO:0000313|EMBL:AEE19077.1, ECO:0000313|Proteomes:UP000008290}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=4H-3-7-5 {ECO:0000313|EMBL:AEE19077.1,
RC   ECO:0000313|Proteomes:UP000008290};
RX   PubMed=21725025; DOI=10.1128/JB.05518-11;
RA   Klippel B., Lochner A., Bruce D.C., Walston Davenport K., Detter C.,
RA   Goodwin L.A., Han J., Han S., Hauser L., Land M.L., Nolan M.,
RA   Ovchinnikova G., Pennacchio L., Pitluck S., Tapia R., Woyke T.,
RA   Wiebusch S., Basner A., Abe F., Horikoshi K., Keller M., Antranikian G.;
RT   "Complete genome sequences of Krokinobacter sp. strain 4H-3-7-5 and
RT   Lacinutrix sp. strain 5H-3-7-4, polysaccharide-degrading members of the
RT   family Flavobacteriaceae.";
RL   J. Bacteriol. 193:4545-4546(2011).
RN   [2] {ECO:0000313|Proteomes:UP000008290}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=4H-3-7-5 {ECO:0000313|Proteomes:UP000008290};
RA   Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S.,
RA   Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L.,
RA   Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Piela B., Lochner A.,
RA   Antranikian F.I., Woyke T.;
RT   "Complete sequence of Krokinobacter diaphorus 4H-3-7-5.";
RL   Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
RN   [3]
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=4H-3-7-5;
RG   US DOE Joint Genome Institute;
RA   Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S.,
RA   Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L.,
RA   Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Piela B., Lochner A.,
RA   Antranikian F.I., Woyke T.;
RT   "Complete sequence of Krokinobacter sp. 4H-3-7-5.";
RL   Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; CP002528; AEE19077.1; -; Genomic_DNA.
DR   RefSeq; WP_013750585.1; NC_015496.1.
DR   AlphaFoldDB; F4B245; -.
DR   STRING; 983548.Krodi_1093; -.
DR   KEGG; kdi:Krodi_1093; -.
DR   eggNOG; COG0189; Bacteria.
DR   HOGENOM; CLU_054353_0_1_10; -.
DR   OMA; CYMNIAS; -.
DR   OrthoDB; 3865600at2; -.
DR   Proteomes; UP000008290; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0016874; F:ligase activity; IEA:UniProtKB-KW.
DR   GO; GO:0046872; F:metal ion binding; IEA:InterPro.
DR   GO; GO:0036211; P:protein modification process; IEA:InterPro.
DR   GO; GO:0006412; P:translation; IEA:UniProtKB-KW.
DR   Gene3D; 3.40.50.20; -; 1.
DR   Gene3D; 3.30.1490.20; ATP-grasp fold, A domain; 1.
DR   Gene3D; 3.30.470.20; ATP-grasp fold, B domain; 1.
DR   InterPro; IPR011761; ATP-grasp.
DR   InterPro; IPR013651; ATP-grasp_RimK-type.
DR   InterPro; IPR013815; ATP_grasp_subdomain_1.
DR   InterPro; IPR041107; Rimk_N.
DR   InterPro; IPR004666; Rp_bS6_RimK/Lys_biosynth_LsyX.
DR   NCBIfam; TIGR00768; rimK_fam; 1.
DR   PANTHER; PTHR21621; RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN; 1.
DR   PANTHER; PTHR21621:SF7; RIBOSOMAL PROTEIN S6--L-GLUTAMATE LIGASE; 1.
DR   Pfam; PF08443; RimK; 1.
DR   Pfam; PF18030; Rimk_N; 1.
DR   SUPFAM; SSF56059; Glutathione synthetase ATP-binding domain-like; 1.
DR   PROSITE; PS50975; ATP_GRASP; 1.
PE   4: Predicted;
KW   ATP-binding {ECO:0000256|PROSITE-ProRule:PRU00409};
KW   Ligase {ECO:0000313|EMBL:AEE19077.1};
KW   Nucleotide-binding {ECO:0000256|PROSITE-ProRule:PRU00409};
KW   Protein biosynthesis {ECO:0000256|ARBA:ARBA00022917}.
FT   DOMAIN          104..287
FT                   /note="ATP-grasp"
FT                   /evidence="ECO:0000259|PROSITE:PS50975"
SQ   SEQUENCE   290 AA;  31636 MW;  A2260C9C7FA34FB7 CRC64;
     MNLKILSRNP HLYSTSRLVE VGLKRGHSVE VIDPLKCDLI IEKKKPTVFY KGRTLETADA
     IIPRIGASIT FYGTAVVRQF EMMDAFTTTT SQALVRSRDK LRSLQVLSRS KLGLPKTIFT
     NYSRDVEEMI AHVGGAPLII KLLEGTQGLG VVLAETKNAA ESVIEAFNGL EARVIVQEYI
     KEAKGADIRA FVVDGQIVGA MKRQGKEGEF RSNLHRGGTA EIISLTDEEE NAAIKAAKAM
     GLGVAGVDML QSDRGPLILE VNSSPGLEGI EKATGKDIAK TIIRYIERNI
//
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