ID F4HQA2_ARATH Unreviewed; 651 AA.
AC F4HQA2;
DT 28-JUN-2011, integrated into UniProtKB/TrEMBL.
DT 28-JUN-2011, sequence version 1.
DT 24-JAN-2024, entry version 80.
DE SubName: Full=HAT transposon superfamily {ECO:0000313|EMBL:AEE36293.1};
GN OrderedLocusNames=At1g79740 {ECO:0000313|Araport:AT1G79740,
GN ECO:0000313|EMBL:AEE36293.1};
GN ORFNames=F19K16.28 {ECO:0000313|EMBL:AEE36293.1}, F19K16_28
GN {ECO:0000313|EMBL:AEE36293.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000313|EMBL:AEE36293.1, ECO:0000313|Proteomes:UP000006548};
RN [1] {ECO:0000313|EMBL:AEE36293.1, ECO:0000313|Proteomes:UP000006548}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2] {ECO:0000313|EMBL:AEE36293.1}
RP NUCLEOTIDE SEQUENCE.
RG TAIR;
RA Swarbreck D., Lamesch P., Wilks C., Huala E.;
RL Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:AEE36293.1}
RP NUCLEOTIDE SEQUENCE.
RA Krishnakumar V., Cheng C.-Y., Chan A.P., Schobel S., Kim M., Ferlanti E.S.,
RA Belyaeva I., Rosen B.D., Micklem G., Miller J.R., Vaughn M., Town C.D.;
RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|Proteomes:UP000006548}
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; CP002684; AEE36293.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM57803.1; -; Genomic_DNA.
DR RefSeq; NP_001320286.1; NM_001334919.1.
DR RefSeq; NP_178092.4; NM_106623.5.
DR AlphaFoldDB; F4HQA2; -.
DR SMR; F4HQA2; -.
DR STRING; 3702.F4HQA2; -.
DR PaxDb; 3702-AT1G79740-1; -.
DR ProteomicsDB; 191399; -.
DR EnsemblPlants; AT1G79740.1; AT1G79740.1; AT1G79740.
DR EnsemblPlants; AT1G79740.4; AT1G79740.4; AT1G79740.
DR GeneID; 844313; -.
DR Gramene; AT1G79740.1; AT1G79740.1; AT1G79740.
DR Gramene; AT1G79740.4; AT1G79740.4; AT1G79740.
DR Araport; AT1G79740; -.
DR TAIR; AT1G79740; -.
DR eggNOG; ENOG502R0D2; Eukaryota.
DR HOGENOM; CLU_016471_3_1_1; -.
DR OMA; HPAMYTA; -.
DR OrthoDB; 449576at2759; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; F4HQA2; baseline and differential.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR InterPro; IPR007021; DUF659.
DR InterPro; IPR008906; HATC_C_dom.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR003656; Znf_BED.
DR PANTHER; PTHR32166:SF67; HAT TRANSPOSON SUPERFAMILY; 1.
DR PANTHER; PTHR32166; OSJNBA0013A04.12 PROTEIN; 1.
DR Pfam; PF05699; Dimer_Tnp_hAT; 1.
DR Pfam; PF04937; DUF659; 1.
DR Pfam; PF02892; zf-BED; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50808; ZF_BED; 1.
PE 1: Evidence at protein level;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Proteomics identification {ECO:0007829|PeptideAtlas:F4HQA2,
KW ECO:0007829|ProteomicsDB:F4HQA2};
KW Reference proteome {ECO:0000313|Proteomes:UP000006548};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00027}.
FT DOMAIN 3..58
FT /note="BED-type"
FT /evidence="ECO:0000259|PROSITE:PS50808"
SQ SEQUENCE 651 AA; 73759 MW; 9ABA7C0672859E28 CRC64;
MVREKDICWE YAEKLDGNKV KCKFCSRVLN GGISRLKHHL SRLPSKGVNP CAKVRDDVTD
RVRSILSAKD DPPITNKYKP PPPLSPPFDA PASKLVFPSS PPNAQDIAER SISLFFFENK
IDFAVARSPS YHHMLDAVAK CGPGFVAPSP KTEWLDRVKS DISLQLKDTE KEWVTTGCTI
IAEAWTDNKS RALINFSVSS PSRIFFHKSV DASSYFKNSK CLADLFDSVI QDIGQEHIVQ
IIMDNSFCYT GISNHLLQNY ATIFVSPCAS QCLNIILEEF SKVDWVNQCI SQAQVISKFV
YNNSPVLDLL RKLTGGQDII RSGVTRSVSN FLSLQSMMKQ KARLKHMFNC PEYTTNTNKP
QSISCVNILE DNDFWRAVEE SVAISEPILK VLREVSTGKP AVGSIYELMS KAKESIRTYY
IMDENKHKVF SDIVDTNWCE HLHSPLHAAA AFLNPSIQYN PEIKFLTSLK EDFFKVLEKL
LPTSDLRRDI TNQIFTFTRA KGMFGCNLAM EARDSVSPGL WWEQFGDSAP VLQRVAIRIL
SQVCSGYNLE RQWSTFQQMH WERRNKIDRE ILNKLAYVNQ NLKLGRMITL ETDPIALEDI
DMMSEWVEEA ENPSPAQWLD RFGTALDGGD LNTRQFGGAI FSANDHNIFG L
//
