ID F4ICF2_ARATH Unreviewed; 267 AA.
AC F4ICF2;
DT 28-JUN-2011, integrated into UniProtKB/TrEMBL.
DT 28-JUN-2011, sequence version 1.
DT 27-MAR-2024, entry version 84.
DE RecName: Full=Tubby-like F-box protein {ECO:0000256|RuleBase:RU361125};
GN Name=TLP10 {ECO:0000313|EMBL:AEE30600.1, ECO:0000313|TAIR:AT1G25280};
GN Synonyms=AtTLP10 {ECO:0000313|EMBL:AEE30600.1}, tubby like protein 10
GN {ECO:0000313|EMBL:AEE30600.1};
GN OrderedLocusNames=At1g25280 {ECO:0000313|Araport:AT1G25280,
GN ECO:0000313|EMBL:AEE30600.1};
GN ORFNames=F4F7.33 {ECO:0000313|EMBL:AEE30600.1}, F4F7_33
GN {ECO:0000313|EMBL:AEE30600.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000313|EMBL:AEE30600.1, ECO:0000313|Proteomes:UP000006548};
RN [1] {ECO:0000313|EMBL:AEE30600.1, ECO:0000313|Proteomes:UP000006548}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2] {ECO:0000313|EMBL:AEE30600.1}
RP NUCLEOTIDE SEQUENCE.
RG TAIR;
RA Swarbreck D., Lamesch P., Wilks C., Huala E.;
RL Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:AEE30600.1}
RP NUCLEOTIDE SEQUENCE.
RA Krishnakumar V., Cheng C.-Y., Chan A.P., Schobel S., Kim M., Ferlanti E.S.,
RA Belyaeva I., Rosen B.D., Micklem G., Miller J.R., Vaughn M., Town C.D.;
RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|Proteomes:UP000006548}
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
CC -!- SIMILARITY: Belongs to the TUB family. {ECO:0000256|ARBA:ARBA00007129,
CC ECO:0000256|RuleBase:RU361125}.
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DR EMBL; CP002684; AEE30600.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE30601.1; -; Genomic_DNA.
DR RefSeq; NP_001117353.1; NM_001123881.1.
DR RefSeq; NP_973909.1; NM_202180.1.
DR AlphaFoldDB; F4ICF2; -.
DR SMR; F4ICF2; -.
DR ProteomicsDB; 182924; -.
DR EnsemblPlants; AT1G25280.2; AT1G25280.2; AT1G25280.
DR EnsemblPlants; AT1G25280.3; AT1G25280.3; AT1G25280.
DR GeneID; 839112; -.
DR Gramene; AT1G25280.2; AT1G25280.2; AT1G25280.
DR Gramene; AT1G25280.3; AT1G25280.3; AT1G25280.
DR Araport; AT1G25280; -.
DR TAIR; AT1G25280; TLP10.
DR HOGENOM; CLU_028236_3_1_1; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; F4ICF2; baseline and differential.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:UniProt.
DR InterPro; IPR025659; Tubby-like_C.
DR InterPro; IPR000007; Tubby_C.
DR InterPro; IPR018066; Tubby_C_CS.
DR PANTHER; PTHR16517:SF171; TUBBY-LIKE F-BOX PROTEIN 10; 1.
DR PANTHER; PTHR16517; TUBBY-RELATED; 1.
DR Pfam; PF01167; Tub; 1.
DR PRINTS; PR01573; SUPERTUBBY.
DR SUPFAM; SSF54518; Tubby C-terminal domain-like; 1.
DR PROSITE; PS01200; TUB_1; 1.
DR PROSITE; PS01201; TUB_2; 1.
PE 1: Evidence at protein level;
KW Proteomics identification {ECO:0007829|PeptideAtlas:F4ICF2};
KW Reference proteome {ECO:0000313|Proteomes:UP000006548}.
FT DOMAIN 1..262
FT /note="Tubby C-terminal"
FT /evidence="ECO:0000259|Pfam:PF01167"
FT REGION 36..62
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 204..223
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 267 AA; 29746 MW; DEEDA4528896DBF5 CRC64;
MDADNISRSS NSYLGKLRSN FLGTKFLVYD TQPPPNTSSS ALITDRTSRS RFHSRRVSPK
VPSGSYNIAQ ITYELNVLGT RGPRRMHCIM NSIPISSLEP GGSVPNQPEK LVPAPYSLDD
SFRSNISFSK SSFDHRSLDF SSSRFSEMGI SCDDNEEEAS FRPLILKNKQ PRWHEQLQCW
CLNFRGRVTV ASVKNFQLVA ARQPQPQGTG AAAAPTSAPA HPEQDKVILQ FGKVGKDMFT
MDYRYPLSAF QAFAICLSSF DTKLACE
//
