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Database: UniProt
Entry: F5ZE47_ALTNA
LinkDB: F5ZE47_ALTNA
Original site: F5ZE47_ALTNA 
ID   F5ZE47_ALTNA            Unreviewed;       243 AA.
AC   F5ZE47;
DT   27-JUL-2011, integrated into UniProtKB/TrEMBL.
DT   27-JUL-2011, sequence version 1.
DT   27-MAR-2024, entry version 78.
DE   RecName: Full=RNA polymerase sigma factor FliA {ECO:0000256|HAMAP-Rule:MF_00962};
DE   AltName: Full=RNA polymerase sigma factor for flagellar operon {ECO:0000256|HAMAP-Rule:MF_00962};
DE   AltName: Full=Sigma F {ECO:0000256|HAMAP-Rule:MF_00962};
DE   AltName: Full=Sigma-28 {ECO:0000256|HAMAP-Rule:MF_00962};
GN   Name=fliA {ECO:0000256|HAMAP-Rule:MF_00962,
GN   ECO:0000313|EMBL:AEF04159.1};
GN   OrderedLocusNames=ambt_13205 {ECO:0000313|EMBL:AEF04159.1};
OS   Alteromonas naphthalenivorans.
OC   Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales;
OC   Alteromonadaceae; Alteromonas/Salinimonas group; Alteromonas.
OX   NCBI_TaxID=715451 {ECO:0000313|EMBL:AEF04159.1, ECO:0000313|Proteomes:UP000000683};
RN   [1] {ECO:0000313|EMBL:AEF04159.1, ECO:0000313|Proteomes:UP000000683}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=JCM 17741 / KACC 18427 / KCTC 11700BP / SN2
RC   {ECO:0000313|Proteomes:UP000000683};
RX   PubMed=21705606; DOI=10.1128/JB.05252-11;
RA   Jin H.M., Jeong H., Moon E.J., Math R.K., Lee K., Kim H.J., Jeon C.O.,
RA   Oh T.K., Kim J.F.;
RT   "Complete genome sequence of the polycyclic aromatic hydrocarbon-degrading
RT   bacterium Alteromonas sp. strain SN2.";
RL   J. Bacteriol. 193:4292-4293(2011).
CC   -!- FUNCTION: Sigma factors are initiation factors that promote the
CC       attachment of RNA polymerase to specific initiation sites and are then
CC       released. This sigma factor controls the expression of flagella-related
CC       genes. {ECO:0000256|HAMAP-Rule:MF_00962}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00962}.
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family. FliA subfamily.
CC       {ECO:0000256|HAMAP-Rule:MF_00962}.
CC   -!- CAUTION: Lacks conserved residue(s) required for the propagation of
CC       feature annotation. {ECO:0000256|HAMAP-Rule:MF_00962}.
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DR   EMBL; CP002339; AEF04159.1; -; Genomic_DNA.
DR   RefSeq; WP_013785089.1; NC_015554.1.
DR   AlphaFoldDB; F5ZE47; -.
DR   GeneID; 83258254; -.
DR   KEGG; alt:ambt_13205; -.
DR   eggNOG; COG1191; Bacteria.
DR   HOGENOM; CLU_014793_8_1_6; -.
DR   OrthoDB; 9799825at2; -.
DR   Proteomes; UP000000683; Chromosome.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0006352; P:DNA-templated transcription initiation; IEA:UniProtKB-UniRule.
DR   CDD; cd06171; Sigma70_r4; 1.
DR   Gene3D; 1.10.1740.10; -; 1.
DR   Gene3D; 1.20.140.160; -; 1.
DR   HAMAP; MF_00962; Sigma70_FliA; 1.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR000943; RNA_pol_sigma70.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR007630; RNA_pol_sigma70_r4.
DR   InterPro; IPR012845; RNA_pol_sigma_FliA_WhiG.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   InterPro; IPR028617; Sigma70_FliA.
DR   NCBIfam; TIGR02479; FliA_WhiG; 1.
DR   NCBIfam; TIGR02937; sigma70-ECF; 1.
DR   PANTHER; PTHR30385:SF7; RNA POLYMERASE SIGMA FACTOR FLIA; 1.
DR   PANTHER; PTHR30385; SIGMA FACTOR F FLAGELLAR; 1.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF04545; Sigma70_r4; 1.
DR   PIRSF; PIRSF000770; RNA_pol_sigma-SigE/K; 1.
DR   PRINTS; PR00046; SIGMA70FCT.
DR   SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR   SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 2.
DR   PROSITE; PS00715; SIGMA70_1; 1.
DR   PROSITE; PS00716; SIGMA70_2; 1.
PE   3: Inferred from homology;
KW   Cell projection {ECO:0000313|EMBL:AEF04159.1};
KW   Cilium {ECO:0000313|EMBL:AEF04159.1};
KW   Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00962};
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|HAMAP-
KW   Rule:MF_00962}; Flagellum {ECO:0000313|EMBL:AEF04159.1};
KW   Sigma factor {ECO:0000256|ARBA:ARBA00023082, ECO:0000256|HAMAP-
KW   Rule:MF_00962};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163, ECO:0000256|HAMAP-
KW   Rule:MF_00962};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015, ECO:0000256|HAMAP-
KW   Rule:MF_00962}.
FT   DOMAIN          44..57
FT                   /note="RNA polymerase sigma-70"
FT                   /evidence="ECO:0000259|PROSITE:PS00715"
FT   DOMAIN          205..231
FT                   /note="RNA polymerase sigma-70"
FT                   /evidence="ECO:0000259|PROSITE:PS00716"
FT   DNA_BIND        206..225
FT                   /note="H-T-H motif"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_00962"
FT   REGION          17..89
FT                   /note="Sigma-70 factor domain-2"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_00962"
FT   REGION          184..232
FT                   /note="Sigma-70 factor domain-4"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_00962"
FT   MOTIF           44..47
FT                   /note="Interaction with polymerase core subunit RpoC"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_00962"
SQ   SEQUENCE   243 AA;  26929 MW;  088F07F0C1D7FE5E CRC64;
     MNSKAAAYQQ QTDKSQLVER HASLVKRIAH HLMARLPASV LVDDLIQSGM IGLLEAARNF
     DGSKGASFET FAGIRIRGAM LDEIRKGDWT PRSVHKNGRA ITEAISQVEG ETGRDARDVD
     IAAKMNVSMQ DYHQMLNEVN AGKLVGIEDL GVSEDVISTE KNRGSDAPLE DLMQGAFQKA
     LAHAITTLPE REAIVLSLYY DEELNLREIG EVLDVSESRV SQIHSQAMLK LKSRMKSWQV
     DEE
//
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