ID F6D6P3_METPW Unreviewed; 728 AA.
AC F6D6P3;
DT 27-JUL-2011, integrated into UniProtKB/TrEMBL.
DT 27-JUL-2011, sequence version 1.
DT 27-MAR-2024, entry version 51.
DE SubName: Full=Phosphoesterase RecJ domain protein {ECO:0000313|EMBL:AEG18326.1};
GN OrderedLocusNames=MSWAN_1309 {ECO:0000313|EMBL:AEG18326.1};
OS Methanobacterium paludis (strain DSM 25820 / JCM 18151 / SWAN1).
OC Archaea; Euryarchaeota; Methanomada group; Methanobacteria;
OC Methanobacteriales; Methanobacteriaceae; Methanobacterium.
OX NCBI_TaxID=868131 {ECO:0000313|EMBL:AEG18326.1, ECO:0000313|Proteomes:UP000009231};
RN [1] {ECO:0000313|Proteomes:UP000009231}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 25820 / JCM 18151 / SWAN1
RC {ECO:0000313|Proteomes:UP000009231};
RA Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S.,
RA Peters L., Ovchinnikova G., Chertkov O., Han C., Tapia R., Land M.,
RA Hauser L., Kyrpides N., Ivanova N., Pagani I., Cadillo-Quiroz H.,
RA Imachi H., Zinder S., Liu W., Woyke T.;
RT "Complete sequence of Methanobacterium sp. SWAN-1.";
RL Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:AEG18326.1, ECO:0000313|Proteomes:UP000009231}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 25820 / JCM 18151 / SWAN1
RC {ECO:0000313|Proteomes:UP000009231};
RX PubMed=24449792; DOI=10.1099/ijs.0.059964-0;
RA Cadillo-Quiroz H., Brauer S.L., Goodson N., Yavitt J.B., Zinder S.H.;
RT "Methanobacterium paludis sp. nov. and a novel strain of Methanobacterium
RT lacus isolated from northern peatlands.";
RL Int. J. Syst. Evol. Microbiol. 64:1473-1480(2014).
CC -!- SIMILARITY: Belongs to the RecJ family.
CC {ECO:0000256|ARBA:ARBA00005915}.
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DR EMBL; CP002772; AEG18326.1; -; Genomic_DNA.
DR RefSeq; WP_013825827.1; NC_015574.1.
DR AlphaFoldDB; F6D6P3; -.
DR STRING; 868131.MSWAN_1309; -.
DR GeneID; 10668814; -.
DR KEGG; mew:MSWAN_1309; -.
DR eggNOG; arCOG00429; Archaea.
DR eggNOG; arCOG06880; Archaea.
DR HOGENOM; CLU_018957_0_0_2; -.
DR OrthoDB; 5596at2157; -.
DR Proteomes; UP000009231; Chromosome.
DR GO; GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.
DR GO; GO:0031072; F:heat shock protein binding; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0051082; F:unfolded protein binding; IEA:InterPro.
DR CDD; cd10719; DnaJ_zf; 1.
DR CDD; cd04487; RecJ_OBF2_like; 1.
DR Gene3D; 3.90.1640.30; -; 1.
DR Gene3D; 2.10.230.10; Heat shock protein DnaJ, cysteine-rich domain; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 2.
DR InterPro; IPR001667; DDH_dom.
DR InterPro; IPR038763; DHH_sf.
DR InterPro; IPR001305; HSP_DnaJ_Cys-rich_dom.
DR InterPro; IPR036410; HSP_DnaJ_Cys-rich_dom_sf.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR004365; NA-bd_OB_tRNA.
DR InterPro; IPR003029; S1_domain.
DR PANTHER; PTHR30255; SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ; 1.
DR PANTHER; PTHR30255:SF2; SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ; 1.
DR Pfam; PF01368; DHH; 1.
DR Pfam; PF00575; S1; 1.
DR Pfam; PF01336; tRNA_anti-codon; 1.
DR SMART; SM00316; S1; 1.
DR SUPFAM; SSF64182; DHH phosphoesterases; 1.
DR SUPFAM; SSF57938; DnaJ/Hsp40 cysteine-rich domain; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 2.
DR PROSITE; PS50126; S1; 1.
DR PROSITE; PS51188; ZF_CR; 1.
PE 3: Inferred from homology;
KW Exonuclease {ECO:0000256|ARBA:ARBA00022839};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022839};
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00546};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00546};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00546}.
FT DOMAIN 1..87
FT /note="CR-type"
FT /evidence="ECO:0000259|PROSITE:PS51188"
FT DOMAIN 124..183
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT ZN_FING 1..87
FT /note="CR-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00546"
SQ SEQUENCE 728 AA; 79727 MW; 69C7858DAE76F7CB CRC64;
MIKRCLECKG KGYKVISYKE CETCNGTGVK SEVDLKKHFK GVATKAVKHF QLDGEEEVPC
DVCGGKGEVE VHETCPVCNG KGEKNVCKKC GKEIDSGDFC DGCEVKETVY ALHPSCDIDD
LEVGSNYKGK ITRVENYGVF VSLSKKAYGL LRMRSPGYRV GDELFVKIIE IKRGKGEVDL
TQSNIKGGYE LVNLRKNVPR VKIGDVTTKS MGKTVKLVGE IVQIQQTSGP TIFTVSDETS
TTWAAAFDEP GVRVYPSINT GDIVEIIGEV SLHGGKIQIE SESVEAVDGD EASEARRLIN
EAIDEKAKPE DTEFLIQSET LEKLKPKMMA AAKAIRRAIL DGRSVLVRHH ADADGICAGV
AIEKAVVPLL KEINNDSDAE WHFFKRAPSK APFYEIEDVV KDLSFSLEDT ERHGQKLPLL
VLLDNGSTEE DILAIMQVKI YDIEVVVIDH HFPGEVNDGK VAVDEYVDTH VNPYLVGGDS
QITAGALAVE VAKMINPEVE DKLMHLPGIA AVGDHARSTE AKAYIKLAEE KGYTEEDLDK
VATCIDFEAF FLRFMNGRGL IDTILGLGNK EKHEKLVDAL YNESQKRVAT QMKAALPNLK
TKELPNGLVF SILDVEKFAH KFTYPAPGKT CGFVHDNIVQ SYGEQRPIIT LAFGPDFSVI
RATDAVNEMY GFNLNNIVSK LAVEIPEAGI DGGGHECAGS LKFVEGLSEQ VLGSFADEVA
NLSKLNTK
//
