ID F6H339_VITVI Unreviewed; 205 AA.
AC F6H339;
DT 27-JUL-2011, integrated into UniProtKB/TrEMBL.
DT 27-JUL-2011, sequence version 1.
DT 24-JAN-2024, entry version 57.
DE RecName: Full=Nuclear nucleic acid-binding protein C1D {ECO:0000256|RuleBase:RU368003};
GN OrderedLocusNames=VIT_04s0008g06680 {ECO:0000313|EMBL:CCB46868.1};
OS Vitis vinifera (Grape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; Vitales; Vitaceae; Viteae; Vitis.
OX NCBI_TaxID=29760 {ECO:0000313|EMBL:CCB46868.1, ECO:0000313|Proteomes:UP000009183};
RN [1] {ECO:0000313|Proteomes:UP000009183}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183};
RX PubMed=17721507; DOI=10.1038/nature06148;
RG The French-Italian Public Consortium for Grapevine Genome Characterization.;
RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A.,
RA Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F.,
RA Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.,
RA Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E.,
RA Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M.,
RA Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M.,
RA Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E.,
RA Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M.,
RA Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G.,
RA Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F.,
RA Wincker P.;
RT "The grapevine genome sequence suggests ancestral hexaploidization in major
RT angiosperm phyla.";
RL Nature 449:463-467(2007).
CC -!- FUNCTION: Plays a role in the recruitment of the exosome to pre-rRNA to
CC mediate the 3'-5' end processing of the 5.8S rRNA.
CC {ECO:0000256|RuleBase:RU368003}.
CC -!- SUBUNIT: Monomer and homodimer. {ECO:0000256|RuleBase:RU368003}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|RuleBase:RU368003}.
CC Nucleus, nucleolus {ECO:0000256|RuleBase:RU368003}. Nucleus
CC {ECO:0000256|ARBA:ARBA00004123, ECO:0000256|RuleBase:RU368003}.
CC -!- SIMILARITY: Belongs to the C1D family. {ECO:0000256|ARBA:ARBA00009154,
CC ECO:0000256|RuleBase:RU368003}.
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DR EMBL; FN595231; CCB46868.1; -; Genomic_DNA.
DR RefSeq; XP_002285540.1; XM_002285504.4.
DR AlphaFoldDB; F6H339; -.
DR STRING; 29760.F6H339; -.
DR PaxDb; 29760-VIT_04s0008g06680-t01; -.
DR EnsemblPlants; Vitvi04g00603_t001; Vitvi04g00603_P001; Vitvi04g00603.
DR GeneID; 100243947; -.
DR Gramene; Vitvi04g00603_t001; Vitvi04g00603_P001; Vitvi04g00603.
DR KEGG; vvi:100243947; -.
DR eggNOG; KOG4835; Eukaryota.
DR HOGENOM; CLU_115161_0_0_1; -.
DR InParanoid; F6H339; -.
DR OrthoDB; 1110035at2759; -.
DR Proteomes; UP000009183; Chromosome 4.
DR ExpressionAtlas; F6H339; baseline and differential.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0000178; C:exosome (RNase complex); IBA:GO_Central.
DR GO; GO:0005730; C:nucleolus; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0000460; P:maturation of 5.8S rRNA; IBA:GO_Central.
DR GO; GO:0010468; P:regulation of gene expression; IBA:GO_Central.
DR InterPro; IPR011082; Exosome-assoc_fac/DNA_repair.
DR InterPro; IPR007146; Sas10/Utp3/C1D.
DR PANTHER; PTHR15341:SF3; NUCLEAR NUCLEIC ACID-BINDING PROTEIN C1D; 1.
DR PANTHER; PTHR15341; SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR; 1.
DR Pfam; PF04000; Sas10_Utp3; 1.
PE 3: Inferred from homology;
KW Cytoplasm {ECO:0000256|RuleBase:RU368003};
KW DNA-binding {ECO:0000256|RuleBase:RU368003};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|RuleBase:RU368003};
KW Reference proteome {ECO:0000313|Proteomes:UP000009183};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|RuleBase:RU368003};
KW rRNA processing {ECO:0000256|ARBA:ARBA00022552,
KW ECO:0000256|RuleBase:RU368003}.
FT REGION 121..170
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 183..205
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 132..161
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 205 AA; 23036 MW; 658BDC5C71FF1DA6 CRC64;
MEGSLVPESA MESVGRTLAN VKDMQTHLKD FLSLCDPQVI AQLPPLQRAQ AHLTLAKATT
TLFALNLRCK GVNPDDHPIK SELERLRLYE DKLERLMDSN KEPLRPSTIL NHQAATRFIE
HSLPDLTPEQ KQSMREISRG EGPKIKHSER SGQKKRKYSS DKQSIQNAAQ AFLEKAAREL
LGDNKDGFKG PLQVNSSDED DKPDN
//