ID F6H9J5_VITVI Unreviewed; 754 AA.
AC F6H9J5;
DT 27-JUL-2011, integrated into UniProtKB/TrEMBL.
DT 27-JUL-2011, sequence version 1.
DT 24-JAN-2024, entry version 53.
DE RecName: Full=Lysine-specific demethylase JMJ25 {ECO:0008006|Google:ProtNLM};
GN OrderedLocusNames=VIT_04s0069g01060 {ECO:0000313|EMBL:CCB48888.1};
OS Vitis vinifera (Grape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; Vitales; Vitaceae; Viteae; Vitis.
OX NCBI_TaxID=29760 {ECO:0000313|EMBL:CCB48888.1, ECO:0000313|Proteomes:UP000009183};
RN [1] {ECO:0000313|Proteomes:UP000009183}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183};
RX PubMed=17721507; DOI=10.1038/nature06148;
RG The French-Italian Public Consortium for Grapevine Genome Characterization.;
RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A.,
RA Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F.,
RA Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.,
RA Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E.,
RA Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M.,
RA Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M.,
RA Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E.,
RA Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M.,
RA Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G.,
RA Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F.,
RA Wincker P.;
RT "The grapevine genome sequence suggests ancestral hexaploidization in major
RT angiosperm phyla.";
RL Nature 449:463-467(2007).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- CAUTION: Lacks conserved residue(s) required for the propagation of
CC feature annotation. {ECO:0000256|PROSITE-ProRule:PRU01002}.
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DR EMBL; FN595500; CCB48888.1; -; Genomic_DNA.
DR AlphaFoldDB; F6H9J5; -.
DR PaxDb; 29760-VIT_04s0069g01060-t01; -.
DR eggNOG; KOG1356; Eukaryota.
DR HOGENOM; CLU_369362_0_0_1; -.
DR InParanoid; F6H9J5; -.
DR Proteomes; UP000009183; Chromosome 4.
DR ExpressionAtlas; F6H9J5; baseline and differential.
DR GO; GO:0000785; C:chromatin; IBA:GO_Central.
DR GO; GO:0000118; C:histone deacetylase complex; IBA:GO_Central.
DR GO; GO:0031490; F:chromatin DNA binding; IBA:GO_Central.
DR GO; GO:0032454; F:histone H3K9 demethylase activity; IBA:GO_Central.
DR GO; GO:0003712; F:transcription coregulator activity; IBA:GO_Central.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR Gene3D; 2.60.120.650; Cupin; 1.
DR InterPro; IPR045109; JHDM2-like.
DR InterPro; IPR003347; JmjC_dom.
DR InterPro; IPR014977; WRC_dom.
DR InterPro; IPR001841; Znf_RING.
DR PANTHER; PTHR12549; JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN; 1.
DR PANTHER; PTHR12549:SF11; LYSINE-SPECIFIC DEMETHYLASE JMJ25; 1.
DR Pfam; PF08879; WRC; 1.
DR SMART; SM00558; JmjC; 1.
DR SUPFAM; SSF51197; Clavaminate synthase-like; 1.
DR PROSITE; PS51667; WRC; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00175};
KW Reference proteome {ECO:0000313|Proteomes:UP000009183};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00175};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00175}.
FT DOMAIN 13..58
FT /note="WRC"
FT /evidence="ECO:0000259|PROSITE:PS51667"
FT DOMAIN 173..222
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT REGION 1..27
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 45..141
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 688..720
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 48..94
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 688..702
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 754 AA; 85338 MW; 2495FD215093CB3C CRC64;
MAKSKKKDVD LPPPDHLRCN RNDGKGWRCR DYKLEGHNLC QYHHDSAISR SQKSKPDRKP
KTKPQPKPKP KTEAEPKPQM EPESKPDAKL KISRSKRAPG RSGAKSSDAT LRSDAARGSE
VGQGREVARG GDGGRRYPSR GKLLRRLLDS DTDQEWRGNG SNAKKRNAQE DECRCCHQCQ
KSDREVVRCR KCQRKRFCHP CIERWYPRVS KEAIAEACPF CSGNCNCKAC LDRDTKTLEP
EMSKDDKIKH SKYLVKVLLP FLEQFDHEQE MEREIEAKIQ GLSPPEIQVQ QAVLREDERV
YCNNCRTSIV DFHRNCPNCS YDLCLTCCRE IQSNFCVSSS SKDPGSTICE WKVKENGDIP
CAPKEMGGCG HGRLDLKCMF SETWVSELKE KAEGLVKTHK LTDVLGIPAC SCSCFKLNSE
IDFDNKKLRK AAAREDSFDN YLYCPSESDI LQGDLVHFQS HWMKGEPVIV SDVLEFTSGL
SWEPMVMWRA FRKVSYTKSS QLAEKAIDCL DWCEVEINIH QFFKGYSEGR AHRNLWPEML
KLKDWPPSNL FQERLPRHGA EFISSLPYLE YTHPRSGLLN LAAKLPQKSL KPDLGPKTYI
AYGVVEELGR GDSVTKLHCD MSDAWARILV KINGEKIPNT VEIWVENMRY SLALWWETRP
TLRSLPTEEK GKPFEAVGEV EGEVLPREGK HVMEDEGGPR LEDQMQSADG TRGQTSGSGC
PLDCSRGLVG SPFGPQGVVR ALGGPIKLGL LEEP
//