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Database: UniProt
Entry: F6H9J5_VITVI
LinkDB: F6H9J5_VITVI
Original site: F6H9J5_VITVI 
ID   F6H9J5_VITVI            Unreviewed;       754 AA.
AC   F6H9J5;
DT   27-JUL-2011, integrated into UniProtKB/TrEMBL.
DT   27-JUL-2011, sequence version 1.
DT   24-JAN-2024, entry version 53.
DE   RecName: Full=Lysine-specific demethylase JMJ25 {ECO:0008006|Google:ProtNLM};
GN   OrderedLocusNames=VIT_04s0069g01060 {ECO:0000313|EMBL:CCB48888.1};
OS   Vitis vinifera (Grape).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; Vitales; Vitaceae; Viteae; Vitis.
OX   NCBI_TaxID=29760 {ECO:0000313|EMBL:CCB48888.1, ECO:0000313|Proteomes:UP000009183};
RN   [1] {ECO:0000313|Proteomes:UP000009183}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183};
RX   PubMed=17721507; DOI=10.1038/nature06148;
RG   The French-Italian Public Consortium for Grapevine Genome Characterization.;
RA   Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A.,
RA   Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F.,
RA   Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.,
RA   Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E.,
RA   Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M.,
RA   Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M.,
RA   Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E.,
RA   Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M.,
RA   Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G.,
RA   Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F.,
RA   Wincker P.;
RT   "The grapevine genome sequence suggests ancestral hexaploidization in major
RT   angiosperm phyla.";
RL   Nature 449:463-467(2007).
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC   -!- CAUTION: Lacks conserved residue(s) required for the propagation of
CC       feature annotation. {ECO:0000256|PROSITE-ProRule:PRU01002}.
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DR   EMBL; FN595500; CCB48888.1; -; Genomic_DNA.
DR   AlphaFoldDB; F6H9J5; -.
DR   PaxDb; 29760-VIT_04s0069g01060-t01; -.
DR   eggNOG; KOG1356; Eukaryota.
DR   HOGENOM; CLU_369362_0_0_1; -.
DR   InParanoid; F6H9J5; -.
DR   Proteomes; UP000009183; Chromosome 4.
DR   ExpressionAtlas; F6H9J5; baseline and differential.
DR   GO; GO:0000785; C:chromatin; IBA:GO_Central.
DR   GO; GO:0000118; C:histone deacetylase complex; IBA:GO_Central.
DR   GO; GO:0031490; F:chromatin DNA binding; IBA:GO_Central.
DR   GO; GO:0032454; F:histone H3K9 demethylase activity; IBA:GO_Central.
DR   GO; GO:0003712; F:transcription coregulator activity; IBA:GO_Central.
DR   GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR   Gene3D; 2.60.120.650; Cupin; 1.
DR   InterPro; IPR045109; JHDM2-like.
DR   InterPro; IPR003347; JmjC_dom.
DR   InterPro; IPR014977; WRC_dom.
DR   InterPro; IPR001841; Znf_RING.
DR   PANTHER; PTHR12549; JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN; 1.
DR   PANTHER; PTHR12549:SF11; LYSINE-SPECIFIC DEMETHYLASE JMJ25; 1.
DR   Pfam; PF08879; WRC; 1.
DR   SMART; SM00558; JmjC; 1.
DR   SUPFAM; SSF51197; Clavaminate synthase-like; 1.
DR   PROSITE; PS51667; WRC; 1.
DR   PROSITE; PS50089; ZF_RING_2; 1.
PE   4: Predicted;
KW   Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00175};
KW   Reference proteome {ECO:0000313|Proteomes:UP000009183};
KW   Zinc {ECO:0000256|PROSITE-ProRule:PRU00175};
KW   Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00175}.
FT   DOMAIN          13..58
FT                   /note="WRC"
FT                   /evidence="ECO:0000259|PROSITE:PS51667"
FT   DOMAIN          173..222
FT                   /note="RING-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50089"
FT   REGION          1..27
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          45..141
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          688..720
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        48..94
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        688..702
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   754 AA;  85338 MW;  2495FD215093CB3C CRC64;
     MAKSKKKDVD LPPPDHLRCN RNDGKGWRCR DYKLEGHNLC QYHHDSAISR SQKSKPDRKP
     KTKPQPKPKP KTEAEPKPQM EPESKPDAKL KISRSKRAPG RSGAKSSDAT LRSDAARGSE
     VGQGREVARG GDGGRRYPSR GKLLRRLLDS DTDQEWRGNG SNAKKRNAQE DECRCCHQCQ
     KSDREVVRCR KCQRKRFCHP CIERWYPRVS KEAIAEACPF CSGNCNCKAC LDRDTKTLEP
     EMSKDDKIKH SKYLVKVLLP FLEQFDHEQE MEREIEAKIQ GLSPPEIQVQ QAVLREDERV
     YCNNCRTSIV DFHRNCPNCS YDLCLTCCRE IQSNFCVSSS SKDPGSTICE WKVKENGDIP
     CAPKEMGGCG HGRLDLKCMF SETWVSELKE KAEGLVKTHK LTDVLGIPAC SCSCFKLNSE
     IDFDNKKLRK AAAREDSFDN YLYCPSESDI LQGDLVHFQS HWMKGEPVIV SDVLEFTSGL
     SWEPMVMWRA FRKVSYTKSS QLAEKAIDCL DWCEVEINIH QFFKGYSEGR AHRNLWPEML
     KLKDWPPSNL FQERLPRHGA EFISSLPYLE YTHPRSGLLN LAAKLPQKSL KPDLGPKTYI
     AYGVVEELGR GDSVTKLHCD MSDAWARILV KINGEKIPNT VEIWVENMRY SLALWWETRP
     TLRSLPTEEK GKPFEAVGEV EGEVLPREGK HVMEDEGGPR LEDQMQSADG TRGQTSGSGC
     PLDCSRGLVG SPFGPQGVVR ALGGPIKLGL LEEP
//
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