ID F6H9P7_VITVI Unreviewed; 995 AA.
AC F6H9P7;
DT 27-JUL-2011, integrated into UniProtKB/TrEMBL.
DT 27-JUL-2011, sequence version 1.
DT 27-MAR-2024, entry version 78.
DE RecName: Full=DExH-box ATP-dependent RNA helicase DExH10 {ECO:0008006|Google:ProtNLM};
GN OrderedLocusNames=VIT_11s0065g00340 {ECO:0000313|EMBL:CCB48916.1};
OS Vitis vinifera (Grape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; Vitales; Vitaceae; Viteae; Vitis.
OX NCBI_TaxID=29760 {ECO:0000313|EMBL:CCB48916.1, ECO:0000313|Proteomes:UP000009183};
RN [1] {ECO:0000313|Proteomes:UP000009183}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183};
RX PubMed=17721507; DOI=10.1038/nature06148;
RG The French-Italian Public Consortium for Grapevine Genome Characterization.;
RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A.,
RA Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F.,
RA Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.,
RA Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E.,
RA Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M.,
RA Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M.,
RA Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E.,
RA Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M.,
RA Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G.,
RA Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F.,
RA Wincker P.;
RT "The grapevine genome sequence suggests ancestral hexaploidization in major
RT angiosperm phyla.";
RL Nature 449:463-467(2007).
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DR EMBL; FN595502; CCB48916.1; -; Genomic_DNA.
DR RefSeq; XP_002266524.2; XM_002266488.4.
DR RefSeq; XP_010656701.1; XM_010658399.2.
DR RefSeq; XP_010656702.1; XM_010658400.2.
DR RefSeq; XP_010656703.1; XM_010658401.2.
DR AlphaFoldDB; F6H9P7; -.
DR STRING; 29760.F6H9P7; -.
DR PaxDb; 29760-VIT_11s0065g00340-t01; -.
DR EnsemblPlants; Vitvi11g00923_t001; Vitvi11g00923_P001; Vitvi11g00923.
DR EnsemblPlants; Vitvi11g00923_t002; Vitvi11g00923_P002; Vitvi11g00923.
DR GeneID; 100246661; -.
DR Gramene; Vitvi11g00923_t001; Vitvi11g00923_P001; Vitvi11g00923.
DR Gramene; Vitvi11g00923_t002; Vitvi11g00923_P002; Vitvi11g00923.
DR KEGG; vvi:100246661; -.
DR eggNOG; KOG0948; Eukaryota.
DR HOGENOM; CLU_002902_0_0_1; -.
DR InParanoid; F6H9P7; -.
DR OrthoDB; 1352at2759; -.
DR Proteomes; UP000009183; Chromosome 11.
DR ExpressionAtlas; F6H9P7; baseline and differential.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0003724; F:RNA helicase activity; IBA:GO_Central.
DR GO; GO:0000460; P:maturation of 5.8S rRNA; IBA:GO_Central.
DR GO; GO:0006401; P:RNA catabolic process; IBA:GO_Central.
DR CDD; cd18024; DEXHc_Mtr4-like; 1.
DR CDD; cd13154; KOW_Mtr4; 1.
DR CDD; cd18795; SF2_C_Ski2; 1.
DR Gene3D; 1.10.3380.30; -; 1.
DR Gene3D; 2.40.30.300; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR048392; MTR4-like_stalk.
DR InterPro; IPR025696; MTR4_beta-barrel.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR016438; SKI2-like.
DR InterPro; IPR012961; Ski2/MTR4_C.
DR PANTHER; PTHR12131; ATP-DEPENDENT RNA AND DNA HELICASE; 1.
DR PANTHER; PTHR12131:SF32; DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH10; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF08148; DSHCT; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF21408; MTR4-like_stalk; 1.
DR Pfam; PF13234; MTR4_beta-barrel; 1.
DR PIRSF; PIRSF005198; Antiviral_helicase_SKI2; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM01142; DSHCT; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Helicase {ECO:0000256|ARBA:ARBA00022806};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000009183}.
FT DOMAIN 86..242
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 319..520
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 1..37
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 995 AA; 111647 MW; 50A8DA41C7C4DBD4 CRC64;
MEESPTLGKR KLPEENSEVK QTPKQEESAS KRRNLTRTCV HEAAVPVGYT SNKDESVHGT
LSNPVYNGKM AKTYPFTLDP FQQVSVACLE RNESVLVSAH TSAGKTAVAE YSIAMAFRDK
QRVIYTSPLK ALSNQKYREL SQEFSDVGLM TGDVTLSPNA SCLVMTTEIL RGMLYRGSEV
LKEVAWVIFD EIHYMKDRER GVVWEESIIF LPTAIKMVFL SATMSNATEF AEWICNLHKQ
PCHVVYTDFR PTPLQHYVFP IGGSGLYLVV DENEQFREDN FVKLQDSFTK QKQGVGSKSV
NSKTSGRIAK GGNASGGSDI FKIVKMIMER KFQPVIIFSF SRRECEQHAM SMSKLDFNTK
EEKDVVEQVF RNAVLCLNEE DRNLPAIELM LPLLQRGIAV HHSGLLPIIK ELVELLFQEG
LVKALFATET FAMGLNMPAK TVVFTAVKKW DGDSHRFIGS GEYIQMSGRA GRRGKDDRGI
CIIMIDEQME MNTLRDMVLG KPAPLVSTFR LSYYSILNLM SRAEGQFTAE HVISNSFHQF
QYEKALPDIG KKVSKLEHEA AMLDASGEAE VAEYHKLRLD IAQLEKKMMS EITRPERVLY
FLLPGRLVKV REGGTDWGWG VVVNVVKKAP AGGTLPSALS SSRGGGYIVD TLLHCSPGST
ENGSRPKPCP PHPGEKGEMH VVPVQLSLIS ALSKLRISIP PDLRPLEARQ SILLAVQELG
TRFPQGLPKL NPVKDMGIED PEFVELANQI EELEQKLFAH PLHKSQDENQ IRSFQRKAEV
NHEIQQLKTK MRDSQLQKFR DELKNRSRVL KKLGHIDADG VVQLKGRAAC LIDTGDELLV
TELMFNGTFN DLDHHQVAAL ASCFIPGDKS TEQIHLRTEL AKPLQQLQDS ARRIAEIQHE
CKLEVNVDEY VESTARPYLM DVIYCWSKGA TFAEVIQMTD IFEGSIIRSA RRLDEFLNQL
RAAANAVGEA NLENKFAAAS ESLRRGIMFA NSLYL
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