ID F6HK03_VITVI Unreviewed; 884 AA.
AC F6HK03;
DT 27-JUL-2011, integrated into UniProtKB/TrEMBL.
DT 27-JUL-2011, sequence version 1.
DT 27-MAR-2024, entry version 65.
DE RecName: Full=Zinc finger CCCH domain-containing protein 5 {ECO:0008006|Google:ProtNLM};
GN OrderedLocusNames=VIT_12s0035g01790 {ECO:0000313|EMBL:CCB55006.1};
OS Vitis vinifera (Grape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; Vitales; Vitaceae; Viteae; Vitis.
OX NCBI_TaxID=29760 {ECO:0000313|EMBL:CCB55006.1, ECO:0000313|Proteomes:UP000009183};
RN [1] {ECO:0000313|Proteomes:UP000009183}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183};
RX PubMed=17721507; DOI=10.1038/nature06148;
RG The French-Italian Public Consortium for Grapevine Genome Characterization.;
RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A.,
RA Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F.,
RA Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.,
RA Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E.,
RA Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M.,
RA Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M.,
RA Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E.,
RA Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M.,
RA Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G.,
RA Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F.,
RA Wincker P.;
RT "The grapevine genome sequence suggests ancestral hexaploidization in major
RT angiosperm phyla.";
RL Nature 449:463-467(2007).
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DR EMBL; FN595990; CCB55006.1; -; Genomic_DNA.
DR RefSeq; XP_010657918.1; XM_010659616.2.
DR AlphaFoldDB; F6HK03; -.
DR STRING; 29760.F6HK03; -.
DR PaxDb; 29760-VIT_12s0035g01790-t01; -.
DR EnsemblPlants; Vitvi12g02121_t001; Vitvi12g02121_P001; Vitvi12g02121.
DR GeneID; 100247160; -.
DR Gramene; Vitvi12g02121_t001; Vitvi12g02121_P001; Vitvi12g02121.
DR eggNOG; KOG2202; Eukaryota.
DR HOGENOM; CLU_015692_1_0_1; -.
DR InParanoid; F6HK03; -.
DR OrthoDB; 472187at2759; -.
DR Proteomes; UP000009183; Chromosome 12.
DR GO; GO:0005681; C:spliceosomal complex; IBA:GO_Central.
DR GO; GO:0089701; C:U2AF complex; IBA:GO_Central.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0030628; F:pre-mRNA 3'-splice site binding; IBA:GO_Central.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IBA:GO_Central.
DR Gene3D; 3.30.70.330; -; 1.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR003954; RRM_dom_euk.
DR InterPro; IPR009145; U2AF_small.
DR InterPro; IPR000571; Znf_CCCH.
DR PANTHER; PTHR12620; U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT; 1.
DR PANTHER; PTHR12620:SF4; ZINC FINGER CCCH-TYPE, RNA BINDING MOTIF AND SERINE_ARGININE RICH 2; 1.
DR PRINTS; PR01848; U2AUXFACTOR.
DR SMART; SM00361; RRM_1; 1.
DR SMART; SM00356; ZnF_C3H1; 2.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR PROSITE; PS50102; RRM; 1.
DR PROSITE; PS50103; ZF_C3H1; 2.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|PROSITE-
KW ProRule:PRU00723}; Reference proteome {ECO:0000313|Proteomes:UP000009183};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176};
KW Zinc {ECO:0000256|ARBA:ARBA00022833, ECO:0000256|PROSITE-ProRule:PRU00723};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00723}.
FT DOMAIN 197..225
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT DOMAIN 229..329
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 331..361
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT ZN_FING 197..225
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT ZN_FING 331..361
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT REGION 1..91
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 143..170
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 399..445
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 487..884
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 10..25
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 26..91
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 143..158
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 419..445
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 487..555
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 587..644
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 655..809
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 818..848
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 884 AA; 104474 MW; A0CAC2DFE9C9C722 CRC64;
MENQGMSRKE KRKAAKKQKR KQTRREAAVR LREEEEAKLN DPEEQERMRL MEQEEAERCE
RERRKFEESE RMWLEAAAER KRRKEVEEEE RRKILEELEK KEVEKENELN EDDDWEYAEG
PAEIIWQGNE IIVKKKRVRI AKKDVDQHSR KEEDTERPTS NPLPPQSEAF SDHNASIISS
QQLFADVSEQ IPNFGTEQDK DHCPFHIKTG ACRFGQRCSR VHFYPDKSCT LLIKNMYNGP
GLAWEQDEGL EYTDEEVERC YEEFYEDVQT EFLKFGEIVN FKVCRNGSFH LRGNVYVHYK
SLDSAVLAYH SINGLYYAGK QVTCEFVGVT RWKVAICGEY MKSRFKTCSH GTACNFIHCF
RNPGGDYEWA DWDKPPPRYW VKNMVALFGL TDESGYDKEV KQESMGRRRS TSNAGTVDAD
RYHSRRSRSR ESGYSHGEYA RRQFDENDAH KNVYYQRHTS DGRKRIKMHE ERYEEEAHFG
DNRYSRSRIH NVESDGDLLR DGTRDRERHN DHRRKSSRQR EKVLESPDDY GERKNKTYDS
EGDWSDREGD KSRKHGHTRK SLKHQKEAMA VMDDLGDSNN SIHEPDSDGG WSDRDGDHDG
HHDHTMKRLK NRSKMSEFSN DHRNSKYRTD ATDSDGDSSH RNRQGDRYHS HRRKSSRHWD
EVSETADDDE DKRKRTHDTD PTGDWSDEVG ERHQSKRRNC SRHWSDDHEE TEKNVKDEFQ
GQEFDTEKPD VPRVQKHSHS SRKDGSNKEM ISRADFISED KKSNGNHEAS SSDQHGRRSK
SYNPDSRYHS DENIDKEGDW EPEKTRKSRR EKSTSHKHHK YRDHEDYSKS KSRGGDRSIH
RRHSTSLNNA DSSEEYQDSE NKDKRHGGKH QSSSHRRHSE KSNS
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