ID F6I192_VITVI Unreviewed; 1599 AA.
AC F6I192;
DT 27-JUL-2011, integrated into UniProtKB/TrEMBL.
DT 27-JUL-2011, sequence version 1.
DT 27-MAR-2024, entry version 74.
DE RecName: Full=Zinc finger CCCH domain-containing protein 19 {ECO:0008006|Google:ProtNLM};
GN OrderedLocusNames=VIT_03s0038g00610 {ECO:0000313|EMBL:CCB60708.1};
OS Vitis vinifera (Grape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; Vitales; Vitaceae; Viteae; Vitis.
OX NCBI_TaxID=29760 {ECO:0000313|EMBL:CCB60708.1, ECO:0000313|Proteomes:UP000009183};
RN [1] {ECO:0000313|Proteomes:UP000009183}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183};
RX PubMed=17721507; DOI=10.1038/nature06148;
RG The French-Italian Public Consortium for Grapevine Genome Characterization.;
RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A.,
RA Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F.,
RA Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.,
RA Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E.,
RA Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M.,
RA Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M.,
RA Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E.,
RA Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M.,
RA Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G.,
RA Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F.,
RA Wincker P.;
RT "The grapevine genome sequence suggests ancestral hexaploidization in major
RT angiosperm phyla.";
RL Nature 449:463-467(2007).
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DR EMBL; FN596508; CCB60708.1; -; Genomic_DNA.
DR STRING; 29760.F6I192; -.
DR PaxDb; 29760-VIT_03s0038g00610-t01; -.
DR EnsemblPlants; Vitvi03g00042_t001; Vitvi03g00042_P001; Vitvi03g00042.
DR Gramene; Vitvi03g00042_t001; Vitvi03g00042_P001; Vitvi03g00042.
DR eggNOG; KOG1081; Eukaryota.
DR eggNOG; KOG1862; Eukaryota.
DR eggNOG; KOG1946; Eukaryota.
DR HOGENOM; CLU_002000_3_0_1; -.
DR InParanoid; F6I192; -.
DR Proteomes; UP000009183; Chromosome 3.
DR ExpressionAtlas; F6I192; baseline and differential.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd00072; GYF; 1.
DR CDD; cd15568; PHD5_NSD; 1.
DR CDD; cd10567; SWIB-MDM2_like; 1.
DR Gene3D; 3.30.1490.40; -; 1.
DR Gene3D; 3.90.70.200; Plus-3 domain; 1.
DR Gene3D; 1.10.245.10; SWIB/MDM2 domain; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR003169; GYF.
DR InterPro; IPR035445; GYF-like_dom_sf.
DR InterPro; IPR004343; Plus-3_dom.
DR InterPro; IPR036128; Plus3-like_sf.
DR InterPro; IPR019835; SWIB_domain.
DR InterPro; IPR036885; SWIB_MDM2_dom_sf.
DR InterPro; IPR003121; SWIB_MDM2_domain.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR46695:SF5; RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOG; 1.
DR PANTHER; PTHR46695; ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED; 1.
DR Pfam; PF02213; GYF; 1.
DR Pfam; PF03126; Plus-3; 1.
DR Pfam; PF02201; SWIB; 1.
DR SMART; SM00444; GYF; 1.
DR SMART; SM00249; PHD; 1.
DR SMART; SM00719; Plus3; 1.
DR SMART; SM00151; SWIB; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR SUPFAM; SSF55277; GYF domain; 1.
DR SUPFAM; SSF159042; Plus3-like; 1.
DR SUPFAM; SSF47592; SWIB/MDM2 domain; 1.
DR PROSITE; PS50829; GYF; 1.
DR PROSITE; PS51360; PLUS3; 1.
DR PROSITE; PS51925; SWIB_MDM2; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|PROSITE-
KW ProRule:PRU00723}; Reference proteome {ECO:0000313|Proteomes:UP000009183};
KW Zinc {ECO:0000256|ARBA:ARBA00022833, ECO:0000256|PROSITE-ProRule:PRU00723};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00723}.
FT DOMAIN 120..186
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT DOMAIN 338..421
FT /note="DM2"
FT /evidence="ECO:0000259|PROSITE:PS51925"
FT DOMAIN 480..613
FT /note="Plus3"
FT /evidence="ECO:0000259|PROSITE:PS51360"
FT DOMAIN 898..952
FT /note="GYF"
FT /evidence="ECO:0000259|PROSITE:PS50829"
FT DOMAIN 1574..1599
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT ZN_FING 1574..1599
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT REGION 1..31
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 49..109
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 264..334
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 446..472
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 693..767
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 958..1128
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1160..1184
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1244..1277
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1315..1393
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1456..1577
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 57..85
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 693..707
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 719..744
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 745..767
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 962..998
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1052..1066
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1092..1128
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1244..1276
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1324..1393
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1486..1531
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1599 AA; 173194 MW; DD80A6FD8DA753EE CRC64;
MEEEDDALND GYKPPSPRQG DSAIGDEVLP QSIDQCDVVS ELDDSQLVGA ASPAAVAEPE
EEEDVEAIAG EEAEAEAEAE AEAEAGVEVA EGGRGGGGRR KRGRNPRVPA RAPLKKSFEE
DVCFICFDGG DLVLCDRRGC PKAYHTTCVN RDEEFFRAKG KWNCGWHQCT ACEKNSYYMC
LTCPFSLCKN CIKDSVIFCV RENKGFCEAC MKIIMLIEKN EQGNKEMDQV DFDDKSSWEF
LFKDYWIDLK GRLSLTSDEL AQAKNPWKGS DAPAGKQEAP DEPNDVYNDG GPGSDSSSGN
VEARKPKRRK AKKRLKSLNK ERDSPSVATA IGAEGTSTPA NTEWASKELL EFVMHMKNGD
KSVTSQFDVQ ALLLEYIKRN KLRDPRRKSQ IICDSRLEYL FGKPRVGHFE MLKLLESHFL
NKEDSQTDDL QGSVVDSEAS QLEVDGNTDT LMKVGKDRRR KARKKGDERG SQSNLDDYAA
IDIHNISLIY LRRNLMEDLI EDTEKLHDKV VGAFVRIRIS GSGQKQDVYR LVQVVGTSKA
ADPYKVGKRT TEVMLEILNL SKTEIISIDI ISNQEFTEDE CMRLRQSIKC GLITPLTVGG
ILEKALALQA VRVKDWLETE IVRLSHLRDR ASEKGRRKEY PFFVQLMHSS IIILNMQVAS
CYHMSYFLKT LPFWECVEKL QRLKTAEERQ RRLEEIPEVH ADPNMDPSYE SEEDESETDD
KRQENHLRPR DTGFSRKRME PSSSRKGDSG SNYSWSTPTK NSSRNWEFSR SMSNKVFSSK
SEDVASPDEI MNEDSWNRRD TQKLSRWEKI SGSNSEVGGW NSHSVVRSES FSTVPLESPM
ASHSGVRSES FSGIALDSSV AAHSVGRSES FSGVALESSS GPPLTGVEPT AAKLSETDKM
WHYQDPSGRV QGPFSLVQLR KWSNSGFFPK DLRIWRTTEK QDDSALLTDV LFAAFPKDSS
PVDNSIGKSQ NVHTLPHPST DSGKPYESSL QQVGENQGGE KPNLDHRGEN WRSQQEVSLS
KGWAASSMVE APKLSTDGSV SDYDGRNDLA NLPSPTPAQS TTGWVAGQAP DKKGTATEFP
VQPAVDPFLG SSGTLLSPTA VTSENGQLIH SSTSPSSVKQ SAGVDSSDLS FASFSQQTSV
PGRKEHNVIE LLGALVPSSV SNSSANAPEV HPQSSVSGES QSVQADAYPL AAPDFAAGSM
NPGATDSKVA GASLPNLVHS VAGLSHPVET HGWGSGSISK PEIVSSCPVS GGESQTWGYG
PPQKLERNNS IPMHSQQPPY GHWVDASSIH NSASSLGTGN LAGYFPSPGL GLPLSDSWRP
QVPSNPPNFQ PPPPGNLGPP ALPNLAPSVP PNMGPRAPPS FGPPAPTNLG HPTPPNLGPP
APPNLNPLPP PPILTPSVPP NMISAAPPNL VPLGPPNIIP PGPPNMISPA PPAMIPPAPP
NLAPAAPPNL PWGMGVAENP SAAPRPGPQN PNAGWGPMPG NPNMSWGPVP GNTNMNWGAS
GQASAPGNAI PSWVAPTGNQ GMWGSDQNHN GDRFSGQRDR GSQGGDPGYG GGRPWNRQSS
FGNGGGGGSG RSTPKGQRLC VYHENGHCKK GASCDYRHS
//
