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Database: UniProt
Entry: F6ING1_9SPHN
LinkDB: F6ING1_9SPHN
Original site: F6ING1_9SPHN 
ID   F6ING1_9SPHN            Unreviewed;       537 AA.
AC   F6ING1;
DT   27-JUL-2011, integrated into UniProtKB/TrEMBL.
DT   27-JUL-2011, sequence version 1.
DT   27-SEP-2017, entry version 40.
DE   RecName: Full=Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463};
GN   Name=secD {ECO:0000256|HAMAP-Rule:MF_01463};
GN   ORFNames=PP1Y_AT20924 {ECO:0000313|EMBL:CCA92963.1};
OS   Novosphingobium sp. PP1Y.
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
OC   Sphingomonadaceae; Novosphingobium.
OX   NCBI_TaxID=702113 {ECO:0000313|EMBL:CCA92963.1, ECO:0000313|Proteomes:UP000009242};
RN   [1] {ECO:0000313|EMBL:CCA92963.1, ECO:0000313|Proteomes:UP000009242}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=PP1Y {ECO:0000313|EMBL:CCA92963.1};
RX   PubMed=21685292; DOI=10.1128/JB.05349-11;
RA   D'Argenio V., Petrillo M., Cantiello P., Naso B., Cozzuto L.,
RA   Notomista E., Paolella G., Di Donato A., Salvatore F.;
RT   "De novo sequencing and assembly of the whole genome of
RT   Novosphingobium sp. strain PP1Y.";
RL   J. Bacteriol. 193:4296-4296(2011).
CC   -!- FUNCTION: Part of the Sec protein translocase complex. Interacts
CC       with the SecYEG preprotein conducting channel. SecDF uses the
CC       proton motive force (PMF) to complete protein translocation after
CC       the ATP-dependent function of SecA. {ECO:0000256|HAMAP-
CC       Rule:MF_01463, ECO:0000256|SAAS:SAAS00541769}.
CC   -!- SUBUNIT: Forms a complex with SecF. Part of the essential Sec
CC       protein translocation apparatus which comprises SecA, SecYEG and
CC       auxiliary proteins SecDF-YajC and YidC. {ECO:0000256|HAMAP-
CC       Rule:MF_01463}.
CC   -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000256|HAMAP-
CC       Rule:MF_01463}; Multi-pass membrane protein {ECO:0000256|HAMAP-
CC       Rule:MF_01463}.
CC   -!- SIMILARITY: Belongs to the SecD/SecF family. SecD subfamily.
CC       {ECO:0000256|HAMAP-Rule:MF_01463}.
CC   -!- CAUTION: Lacks conserved residue(s) required for the propagation
CC       of feature annotation. {ECO:0000256|HAMAP-Rule:MF_01463}.
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DR   EMBL; FR856862; CCA92963.1; -; Genomic_DNA.
DR   RefSeq; WP_007011184.1; NC_015580.1.
DR   STRING; 702113.PP1Y_AT20924; -.
DR   EnsemblBacteria; CCA92963; CCA92963; PP1Y_AT20924.
DR   KEGG; npp:PP1Y_AT20924; -.
DR   eggNOG; ENOG4107QN8; Bacteria.
DR   eggNOG; COG0342; LUCA.
DR   KO; K03072; -.
DR   OrthoDB; POG091H02C5; -.
DR   Proteomes; UP000009242; Chromosome.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   GO; GO:0005622; C:intracellular; IEA:GOC.
DR   GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0015450; F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity; IEA:InterPro.
DR   GO; GO:0065002; P:intracellular protein transmembrane transport; IEA:UniProtKB-UniRule.
DR   GO; GO:0006605; P:protein targeting; IEA:UniProtKB-UniRule.
DR   GO; GO:0043952; P:protein transport by the Sec complex; IEA:UniProtKB-UniRule.
DR   HAMAP; MF_01463_B; SecD_B; 1.
DR   InterPro; IPR005791; SecD.
DR   InterPro; IPR022813; SecD/SecF_arch_bac.
DR   InterPro; IPR022645; SecD/SecF_bac.
DR   InterPro; IPR022646; SecD/SecF_CS.
DR   Pfam; PF07549; Sec_GG; 1.
DR   Pfam; PF02355; SecD_SecF; 1.
DR   TIGRFAMs; TIGR00916; 2A0604s01; 1.
DR   TIGRFAMs; TIGR01129; secD; 1.
PE   3: Inferred from homology;
KW   Cell membrane {ECO:0000256|HAMAP-Rule:MF_01463,
KW   ECO:0000256|SAAS:SAAS00425060};
KW   Complete proteome {ECO:0000313|Proteomes:UP000009242};
KW   Membrane {ECO:0000256|HAMAP-Rule:MF_01463,
KW   ECO:0000256|SAAS:SAAS00284057};
KW   Protein transport {ECO:0000256|HAMAP-Rule:MF_01463,
KW   ECO:0000256|SAAS:SAAS00425133};
KW   Reference proteome {ECO:0000313|Proteomes:UP000009242};
KW   Translocation {ECO:0000256|HAMAP-Rule:MF_01463,
KW   ECO:0000256|SAAS:SAAS00425069};
KW   Transmembrane {ECO:0000256|HAMAP-Rule:MF_01463,
KW   ECO:0000256|SAAS:SAAS00425065};
KW   Transmembrane helix {ECO:0000256|HAMAP-Rule:MF_01463,
KW   ECO:0000256|SAAS:SAAS00425143};
KW   Transport {ECO:0000256|HAMAP-Rule:MF_01463,
KW   ECO:0000256|SAAS:SAAS00425109}.
FT   TRANSMEM    376    393       Helical. {ECO:0000256|HAMAP-Rule:
FT                                MF_01463}.
FT   TRANSMEM    400    420       Helical. {ECO:0000256|HAMAP-Rule:
FT                                MF_01463}.
FT   TRANSMEM    426    446       Helical. {ECO:0000256|HAMAP-Rule:
FT                                MF_01463}.
FT   TRANSMEM    474    493       Helical. {ECO:0000256|HAMAP-Rule:
FT                                MF_01463}.
FT   TRANSMEM    499    523       Helical. {ECO:0000256|HAMAP-Rule:
FT                                MF_01463}.
SQ   SEQUENCE   537 AA;  57251 MW;  B9B16952EAEA55EA CRC64;
     MLEFPTWKKL WYWGLTLVIA AAALPSLFSV SGLPWPSVLP APEVNLGLDL AGGSHILLEA
     DKSQVAQQRL ENMEESVRGR LRLANPRIAI GDISSSNGRL SFMLKDPAQV DAARDEILAL
     TSGAGLTGQR DWDIKVEDGN RFVLTPTREG LDQAVSDAMD SAIEVVRKRI DALGTREPTI
     IRQGEERIVV QVPGLDDPEA LKSLIGQTAK LEFKLVDETA APNDIQQGIV PPGDELVPWA
     DPNSPGSGGV PMLAVKRLGG IKGDQLTNAK QGFDPKTNAP VVSITFDQTG GAKFAKLTSE
     NVNKRFAIIL DGKALSAPNI NEPILGGSAQ ISGSFSVQSA TQLAIALRSG ALPVDLTVVE
     ERTVGPDLGA DSIRKGLIAM GVGSLLVVLL MIVTYGRFGI YATIALIFNV MMILGVMAVM
     GTTLTLPGIA GFVLTIGAAV DANVLIYERM REERKKGRRV IAAVENGYKE ASRAIYDANV
     TNAIAGALLF AFGSGPVRGF AVVLIIGLFT SVFTGVTLTR MWVASWLRKA RPTELHV
//
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