ID F6W365_HORSE Unreviewed; 694 AA.
AC F6W365;
DT 27-JUL-2011, integrated into UniProtKB/TrEMBL.
DT 13-SEP-2023, sequence version 3.
DT 27-MAR-2024, entry version 64.
DE RecName: Full=Small ribosomal subunit protein mS39 {ECO:0000256|ARBA:ARBA00035134};
GN Name=PTCD3 {ECO:0000313|VGNC:VGNC:21978};
GN Synonyms=LOC111771997 {ECO:0000313|Ensembl:ENSECAP00000072205.1};
OS Equus caballus (Horse).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus.
OX NCBI_TaxID=9796 {ECO:0000313|Ensembl:ENSECAP00000018524.3, ECO:0000313|Proteomes:UP000002281};
RN [1] {ECO:0000313|Ensembl:ENSECAP00000018524.3, ECO:0000313|Proteomes:UP000002281}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Thoroughbred {ECO:0000313|Ensembl:ENSECAP00000018524.3,
RC ECO:0000313|Proteomes:UP000002281};
RX PubMed=19892987; DOI=10.1126/science.1178158;
RG Broad Institute Genome Sequencing Platform;
RG Broad Institute Whole Genome Assembly Team;
RA Wade C.M., Giulotto E., Sigurdsson S., Zoli M., Gnerre S., Imsland F.,
RA Lear T.L., Adelson D.L., Bailey E., Bellone R.R., Bloecker H., Distl O.,
RA Edgar R.C., Garber M., Leeb T., Mauceli E., MacLeod J.N., Penedo M.C.T.,
RA Raison J.M., Sharpe T., Vogel J., Andersson L., Antczak D.F., Biagi T.,
RA Binns M.M., Chowdhary B.P., Coleman S.J., Della Valle G., Fryc S.,
RA Guerin G., Hasegawa T., Hill E.W., Jurka J., Kiialainen A., Lindgren G.,
RA Liu J., Magnani E., Mickelson J.R., Murray J., Nergadze S.G., Onofrio R.,
RA Pedroni S., Piras M.F., Raudsepp T., Rocchi M., Roeed K.H., Ryder O.A.,
RA Searle S., Skow L., Swinburne J.E., Syvaenen A.C., Tozaki T., Valberg S.J.,
RA Vaudin M., White J.R., Zody M.C., Lander E.S., Lindblad-Toh K.;
RT "Genome sequence, comparative analysis, and population genetics of the
RT domestic horse.";
RL Science 326:865-867(2009).
RN [2] {ECO:0000313|Ensembl:ENSECAP00000018524.3}
RP IDENTIFICATION.
RC STRAIN=Thoroughbred {ECO:0000313|Ensembl:ENSECAP00000018524.3};
RG Ensembl;
RL Submitted (NOV-2023) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000256|ARBA:ARBA00004173}.
CC -!- SIMILARITY: Belongs to the mitochondrion-specific ribosomal protein
CC mS39 family. {ECO:0000256|ARBA:ARBA00008551}.
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DR STRING; 9796.ENSECAP00000031470; -.
DR PaxDb; 9796-ENSECAP00000031470; -.
DR Ensembl; ENSECAT00000022412.4; ENSECAP00000018524.3; ENSECAG00000020623.4.
DR Ensembl; ENSECAT00000135801.1; ENSECAP00000072205.1; ENSECAG00000037856.2.
DR VGNC; VGNC:21978; PTCD3.
DR GeneTree; ENSGT00390000016876; -.
DR HOGENOM; CLU_026264_0_1_1; -.
DR OMA; AWIRDEH; -.
DR TreeFam; TF320158; -.
DR Proteomes; UP000002281; Chromosome 15.
DR Bgee; ENSECAG00000020623; Expressed in gluteus medius and 23 other cell types or tissues.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:1990904; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0043024; F:ribosomal small subunit binding; IEA:InterPro.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
DR GO; GO:0032543; P:mitochondrial translation; IEA:InterPro.
DR GO; GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 2.
DR InterPro; IPR033443; PPR_long.
DR InterPro; IPR037387; PTCD3.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR16276; PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3; 1.
DR PANTHER; PTHR16276:SF1; PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3, MITOCHONDRIAL; 1.
DR Pfam; PF17177; PPR_long; 1.
PE 3: Inferred from homology;
KW Mitochondrion {ECO:0000256|ARBA:ARBA00023128};
KW Reference proteome {ECO:0000313|Proteomes:UP000002281};
KW Ribonucleoprotein {ECO:0000256|ARBA:ARBA00023274};
KW Ribosomal protein {ECO:0000256|ARBA:ARBA00022980};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884};
KW rRNA-binding {ECO:0000256|ARBA:ARBA00022730};
KW Translation regulation {ECO:0000256|ARBA:ARBA00022845}.
FT DOMAIN 282..396
FT /note="Pentacotripeptide-repeat region of PRORP"
FT /evidence="ECO:0000259|Pfam:PF17177"
FT REGION 213..242
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 675..694
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 694 AA; 79195 MW; 32961090A519F5C4 CRC64;
MAAAASARWL RIRCRLCLPL KSRRADPCEQ APSCRAFIFC RFYSESAALP NVEGADVTGI
EEVIIPKRKT WDKVAVLQAL ASTVNRDTTA APYAFQDDPY LIPASSLESR SFLLAKKSGE
NAAKFIINSH PKYFQKDIAE PHIPCLMPEY FEPQIEDISE AALKERIKLR KVKASVDMFD
QLLQAGTTVS LETTNGLLDL LCYYGDQEPS ADYHFQQREQ SEESEEATEE NNEKSRKKAG
PQLGVTWRAK NNAERIFALM PEKNAHSYCT MIRGMVKHRA PVQALNLYTE LLNNRLRADV
YTFNAVIEAK ALMVNEKFEE KWNNILELLK QMVAQKVKPN LQTFNTILKC LRRFYAFGRL
PALQTLREMK AIGIEPSLAT YHYIIQLFYQ QESSAKGSPL IIYDIMNEVM GKKFSPKDPD
DDAFFQSAMR VCSSLRDLEL AYQVHGLLNT GDNWKFIGPD NRRNFYYSRF FSLLCLMEQI
DVTLKWYKDL IPSVFFPHSQ TLIDLLQALD VANRLELIPQ IWKDSKEYGH TYRSDLKEEI
LMLMARDQHP PELQVAFADC AADIKSTYEN QDARQTVPDW PANPLNYIAV LFLRAGRTQE
AWKMLELFRK HNKIPRNELL NEFMDSAKAS SSPDQAMEVV KLASAFSLPI CESLTRRVMA
DFAVSQEQKE ALGNLTALTS DSDSDSDSDI SEGK
//
