ID F7BL29_CIOIN Unreviewed; 439 AA.
AC F7BL29; A0A1W2W2D1;
DT 27-JUL-2011, integrated into UniProtKB/TrEMBL.
DT 27-JUL-2011, sequence version 1.
DT 27-MAR-2024, entry version 69.
DE RecName: Full=IF rod domain-containing protein {ECO:0000259|PROSITE:PS51842};
GN Name=LOC100182102 {ECO:0000313|Ensembl:ENSCINP00000000766.3};
OS Ciona intestinalis (Transparent sea squirt) (Ascidia intestinalis).
OC Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
OC Cionidae; Ciona.
OX NCBI_TaxID=7719 {ECO:0000313|Ensembl:ENSCINP00000000766.3, ECO:0000313|Proteomes:UP000008144};
RN [1] {ECO:0000313|Proteomes:UP000008144}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=12481130; DOI=10.1126/science.1080049;
RA Dehal P., Satou Y., Campbell R.K., Chapman J., Degnan B., De Tomaso A.,
RA Davidson B., Di Gregorio A., Gelpke M., Goodstein D.M., Harafuji N.,
RA Hastings K.E., Ho I., Hotta K., Huang W., Kawashima T., Lemaire P.,
RA Martinez D., Meinertzhagen I.A., Necula S., Nonaka M., Putnam N., Rash S.,
RA Saiga H., Satake M., Terry A., Yamada L., Wang H.G., Awazu S., Azumi K.,
RA Boore J., Branno M., Chin-Bow S., DeSantis R., Doyle S., Francino P.,
RA Keys D.N., Haga S., Hayashi H., Hino K., Imai K.S., Inaba K., Kano S.,
RA Kobayashi K., Kobayashi M., Lee B.I., Makabe K.W., Manohar C., Matassi G.,
RA Medina M., Mochizuki Y., Mount S., Morishita T., Miura S., Nakayama A.,
RA Nishizaka S., Nomoto H., Ohta F., Oishi K., Rigoutsos I., Sano M.,
RA Sasaki A., Sasakura Y., Shoguchi E., Shin-i T., Spagnuolo A., Stainier D.,
RA Suzuki M.M., Tassy O., Takatori N., Tokuoka M., Yagi K., Yoshizaki F.,
RA Wada S., Zhang C., Hyatt P.D., Larimer F., Detter C., Doggett N.,
RA Glavina T., Hawkins T., Richardson P., Lucas S., Kohara Y., Levine M.,
RA Satoh N., Rokhsar D.S.;
RT "The draft genome of Ciona intestinalis: insights into chordate and
RT vertebrate origins.";
RL Science 298:2157-2167(2002).
RN [2] {ECO:0000313|Ensembl:ENSCINP00000000766.3}
RP IDENTIFICATION.
RG Ensembl;
RL Submitted (NOV-2023) to UniProtKB.
CC -!- SIMILARITY: Belongs to the intermediate filament family.
CC {ECO:0000256|RuleBase:RU000685}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; EAAA01002956; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_002119125.1; XM_002119089.4.
DR AlphaFoldDB; F7BL29; -.
DR STRING; 7719.ENSCINP00000000766; -.
DR Ensembl; ENSCINT00000000766.3; ENSCINP00000000766.3; ENSCING00000000419.3.
DR GeneID; 100182102; -.
DR KEGG; cin:100182102; -.
DR GeneTree; ENSGT00940000160203; -.
DR HOGENOM; CLU_012560_7_4_1; -.
DR InParanoid; F7BL29; -.
DR OMA; HPTLYYY; -.
DR OrthoDB; 4640531at2759; -.
DR TreeFam; TF332742; -.
DR Proteomes; UP000008144; Chromosome 9.
DR GO; GO:0005882; C:intermediate filament; IEA:UniProtKB-KW.
DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR Gene3D; 1.20.5.170; -; 1.
DR Gene3D; 1.20.5.500; Single helix bin; 1.
DR Gene3D; 1.20.5.1160; Vasodilator-stimulated phosphoprotein; 1.
DR InterPro; IPR018039; IF_conserved.
DR InterPro; IPR039008; IF_rod_dom.
DR InterPro; IPR002957; Keratin_I.
DR PANTHER; PTHR45652; GLIAL FIBRILLARY ACIDIC PROTEIN; 1.
DR PANTHER; PTHR45652:SF17; IF ROD DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF00038; Filament; 1.
DR PRINTS; PR01248; TYPE1KERATIN.
DR SMART; SM01391; Filament; 1.
DR SUPFAM; SSF64593; Intermediate filament protein, coiled coil region; 2.
DR PROSITE; PS00226; IF_ROD_1; 1.
DR PROSITE; PS51842; IF_ROD_2; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW Intermediate filament {ECO:0000256|ARBA:ARBA00022754,
KW ECO:0000256|RuleBase:RU000685};
KW Reference proteome {ECO:0000313|Proteomes:UP000008144}.
FT DOMAIN 70..378
FT /note="IF rod"
FT /evidence="ECO:0000259|PROSITE:PS51842"
FT REGION 1..25
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 375..400
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 81..108
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 177..204
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 276..317
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 439 AA; 50091 MW; C7DFC3D1BE1F9ABC CRC64;
MASKQGRSSY RNTFGSQTAY STAGSKGYSK SFVMEEPIAA KRVSYSYSAS SSGGGATGAN
LDLGGLKLNE KETLNGINNR FASYIEKVRY LEEQNSKLEK RIREASARKT VDLGEDKLQK
LRRLRAQVDE ATLAKVRSEI ARDNLRGEAS EIKWKLEHEG RLRSELDDEL GRLRKDVDDA
TMVRVDLERK IETLREELEY GKKLHAEEID DLKAQVRDQG VNVEVDGIAP DVAELLRQIR
AQYESIVLKN KDEAEQWYKN KFEDLEERAK VNVEDMEKVR ADINDYRKQV TQLEMELESL
RGTNDYLERN LADVEKRYEV EAARYQSRVA QLGSEFDHAQ GEMKRHLAEY KRLMSVKISL
EKEILTYRRL LEGEEKRVSS SSSSSDDDDE AYQTKTTKKV IVKTIETRDG KIVSSSISEK
QLLEDKSDSS SSSSSSDEE
//