ID F7H9T7_CALJA Unreviewed; 1086 AA.
AC F7H9T7; U3CP84;
DT 27-JUL-2011, integrated into UniProtKB/TrEMBL.
DT 11-DEC-2019, sequence version 2.
DT 24-JAN-2024, entry version 79.
DE SubName: Full=Semaphorin 6D {ECO:0000313|Ensembl:ENSCJAP00000003632.2};
DE SubName: Full=Semaphorin-6D isoform 4 {ECO:0000313|EMBL:JAB20074.1};
GN Name=SEMA6D {ECO:0000313|EMBL:JAB20074.1,
GN ECO:0000313|Ensembl:ENSCJAP00000003632.2};
OS Callithrix jacchus (White-tufted-ear marmoset).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae;
OC Callitrichinae; Callithrix; Callithrix.
OX NCBI_TaxID=9483 {ECO:0000313|Ensembl:ENSCJAP00000003632.2, ECO:0000313|Proteomes:UP000008225};
RN [1] {ECO:0000313|Ensembl:ENSCJAP00000003632.2}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA Warren W., Ye L., Minx P., Worley K., Gibbs R., Wilson R.K.;
RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:JAB20074.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Hippocampus {ECO:0000313|EMBL:JAB20074.1};
RX PubMed=25243066; DOI=10.1186/2047-217X-3-14;
RA Maudhoo M.D., Ren D., Gradnigo J.S., Gibbs R.M., Lubker A.C.,
RA Moriyama E.N., French J.A., Norgren R.B.Jr.;
RT "De novo assembly of the common marmoset transcriptome from NextGen mRNA
RT sequences.";
RL Gigascience 3:14-14(2014).
RN [3] {ECO:0000313|Ensembl:ENSCJAP00000003632.2}
RP IDENTIFICATION.
RG Ensembl;
RL Submitted (JUL-2023) to UniProtKB.
CC -!- CAUTION: Lacks conserved residue(s) required for the propagation of
CC feature annotation. {ECO:0000256|PROSITE-ProRule:PRU00352}.
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DR EMBL; GAMS01003062; JAB20074.1; -; mRNA.
DR RefSeq; XP_009003634.1; XM_009005386.2.
DR RefSeq; XP_009003635.1; XM_009005387.2.
DR RefSeq; XP_009003636.1; XM_009005388.2.
DR RefSeq; XP_017832321.1; XM_017976832.1.
DR RefSeq; XP_017832322.1; XM_017976833.1.
DR STRING; 9483.ENSCJAP00000003632; -.
DR Ensembl; ENSCJAT00000003826.4; ENSCJAP00000003632.2; ENSCJAG00000001936.5.
DR GeneID; 100411320; -.
DR KEGG; cjc:100411320; -.
DR CTD; 80031; -.
DR eggNOG; KOG3611; Eukaryota.
DR GeneTree; ENSGT00940000159303; -.
DR OrthoDB; 5399685at2759; -.
DR TreeFam; TF316102; -.
DR Proteomes; UP000008225; Chromosome 10.
DR Bgee; ENSCJAG00000001936; Expressed in frontal cortex and 6 other cell types or tissues.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0030215; F:semaphorin receptor binding; IEA:InterPro.
DR GO; GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.
DR GO; GO:0007399; P:nervous system development; IEA:UniProtKB-KW.
DR Gene3D; 3.30.1680.10; ligand-binding face of the semaphorins, domain 2; 1.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 1.
DR InterPro; IPR002165; Plexin_repeat.
DR InterPro; IPR001627; Semap_dom.
DR InterPro; IPR036352; Semap_dom_sf.
DR InterPro; IPR027231; Semaphorin.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR PANTHER; PTHR11036; SEMAPHORIN; 1.
DR PANTHER; PTHR11036:SF65; SEMAPHORIN-6D; 1.
DR Pfam; PF01437; PSI; 1.
DR Pfam; PF01403; Sema; 1.
DR SMART; SM00630; Sema; 1.
DR SUPFAM; SSF103575; Plexin repeat; 1.
DR SUPFAM; SSF101912; Sema domain; 1.
DR PROSITE; PS51004; SEMA; 1.
PE 2: Evidence at transcript level;
KW Developmental protein {ECO:0000256|ARBA:ARBA00022473};
KW Differentiation {ECO:0000256|ARBA:ARBA00022782};
KW Glycoprotein {ECO:0000256|ARBA:ARBA00023180};
KW Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|SAM:Phobius};
KW Neurogenesis {ECO:0000256|ARBA:ARBA00022902};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000008225};
KW Signal {ECO:0000256|SAM:SignalP}; Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT SIGNAL 1..20
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 21..1086
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5040102797"
FT TRANSMEM 676..699
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 27..512
FT /note="Sema"
FT /evidence="ECO:0000259|PROSITE:PS51004"
FT REGION 757..788
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 800..838
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 852..887
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 934..1086
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 800..814
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 863..887
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 941..959
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 981..1012
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1030..1054
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1086 AA; 121144 MW; 9F8A3A3BFE2DB84D CRC64;
MRVFLLCAYI LLLMVSQLRA ISFPEDDEPL NTVDYHYSRQ YPVFRGRPSG NESQHRLDFQ
LMLKIRDTLY IAGRDQVYTV NLNEMPKTEV IPSKKLTWRS RQQDRENCAM KGKHKDECHN
FIKVFVPRND EMVFVCGTNA FNPMCRYYRL STLEYDGEEI SGLARCPFDA KQTNVALFAD
GKLYSATVAD FLASDAVIYR SMGDGSALRT IKYDSKWIKE PHFLHAIEYG NYVYFFFREI
AVEHNNLGKA VYSRVARICK NDMGGSQRVL EKHWTSFLKA RLNCSVPGDS FFYFDVLQSI
TDIIQISGIP TVVGVFTTQL NSIPGSAVCA FSMDDIEKVF KGRFKEQKTP DSVWTAVPED
KVPKPRPGCC AKHGVAEAYK TSIDFPDETL SFIKSHPLMD SAVPPIADEP WFTKTRVRYR
LTAITVDHSA GPYQNYTVIF VGSEAGVVLK VLAKTSPFSL NDSILLEEID AYNHAKCNAE
NEEDKKVISL QLDKDHHTIY VAFSSCVIRI PLSRCERYGS CKKSCIASRD PYCGWLSQGS
CGRVTPGMLL LTEDFFAFHN HSAGGYEQDT EFGNTAHLGD CHEILPTSTT PDYKIFGGPT
SDMEVSSSSV TTVASIPEIT PKVIDTWRPK LTSSRKFVVQ DDPNTSDFTD PLSGIPKGVR
WEVQSGESNQ MVHMNVLITC VFAAFVLGAF IAGVAVYCYR DMFVRKNRKI HKDAESAQSC
TDSSGSFAKL NGLFDSPVKE YQQNIDSPKL YSNLLTSRKE LPPNGDTKSM VMDHRGQPPE
LAALPTPEST PVLHQKTLQA MKSHSEKAHG HGASRKETPQ FFPSSPPPHS PLSHGHIPSA
IVLPNATHDY NTSFSNSNAH KAEKKLQNID HPLTKSSSKR DHRRSVDSRN TLNDLLKHLN
DPNSNPKAIM GDIQMAHQNL MLDPMGAMSE VPPKVPNREA SLYSPPSTLP RNSPTKRVDV
PTTPGVPMTS LERQRGYHKN SSQRHSISAM PKNLNSPNGV SLSRQPSMNR GGYMPTPTGA
KGDYIQGTPG SVHLQPSLSR QSSYTSNGTL PRTGLKRTPS LKPDVPPKPS FVPQTPSVRP
LNKYTY
//