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Database: UniProt
Entry: F7YUB6_9THEM
LinkDB: F7YUB6_9THEM
Original site: F7YUB6_9THEM 
ID   F7YUB6_9THEM            Unreviewed;       568 AA.
AC   F7YUB6;
DT   21-SEP-2011, integrated into UniProtKB/TrEMBL.
DT   21-SEP-2011, sequence version 1.
DT   24-JAN-2024, entry version 72.
DE   SubName: Full=PAS modulated sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:AEH51315.1};
GN   ORFNames=Theth_1243 {ECO:0000313|EMBL:AEH51315.1};
OS   Pseudothermotoga thermarum DSM 5069.
OC   Bacteria; Thermotogota; Thermotogae; Thermotogales; Thermotogaceae;
OC   Pseudothermotoga.
OX   NCBI_TaxID=688269 {ECO:0000313|EMBL:AEH51315.1, ECO:0000313|Proteomes:UP000006804};
RN   [1] {ECO:0000313|EMBL:AEH51315.1, ECO:0000313|Proteomes:UP000006804}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 5069 {ECO:0000313|EMBL:AEH51315.1,
RC   ECO:0000313|Proteomes:UP000006804};
RG   US DOE Joint Genome Institute (JGI-PGF);
RA   Lucas S., Copeland A., Lapidus A., Bruce D., Goodwin L., Pitluck S.,
RA   Kyrpides N., Mavromatis K., Ivanova N., Zeytun A., Brettin T., Detter J.C.,
RA   Tapia R., Han C., Land M., Hauser L., Markowitz V., Cheng J.-F.,
RA   Hugenholtz P., Woyke T., Wu D., Spring S., Schroeder M., Brambilla E.,
RA   Klenk H.-P., Eisen J.A.;
RT   "The complete genome of Thermotoga thermarum DSM 5069.";
RL   Submitted (NOV-2010) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; CP002351; AEH51315.1; -; Genomic_DNA.
DR   RefSeq; WP_013932534.1; NC_015707.1.
DR   AlphaFoldDB; F7YUB6; -.
DR   STRING; 688269.Theth_1243; -.
DR   KEGG; tta:Theth_1243; -.
DR   PATRIC; fig|688269.3.peg.1280; -.
DR   eggNOG; COG3829; Bacteria.
DR   HOGENOM; CLU_000445_8_1_0; -.
DR   OrthoDB; 9803970at2; -.
DR   Proteomes; UP000006804; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR   CDD; cd00009; AAA; 1.
DR   CDD; cd00130; PAS; 2.
DR   Gene3D; 1.10.8.60; -; 1.
DR   Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR   Gene3D; 3.30.450.20; PAS domain; 2.
DR   InterPro; IPR003593; AAA+_ATPase.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR002197; HTH_Fis.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR000014; PAS.
DR   InterPro; IPR035965; PAS-like_dom_sf.
DR   InterPro; IPR013767; PAS_fold.
DR   InterPro; IPR002078; Sigma_54_int.
DR   InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR   InterPro; IPR025944; Sigma_54_int_dom_CS.
DR   NCBIfam; TIGR00229; sensory_box; 2.
DR   PANTHER; PTHR32071:SF57; SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR YQIR-RELATED; 1.
DR   PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR   Pfam; PF02954; HTH_8; 1.
DR   Pfam; PF00989; PAS; 1.
DR   Pfam; PF13426; PAS_9; 1.
DR   Pfam; PF00158; Sigma54_activat; 1.
DR   PRINTS; PR01590; HTHFIS.
DR   SMART; SM00382; AAA; 1.
DR   SMART; SM00091; PAS; 2.
DR   SUPFAM; SSF46689; Homeodomain-like; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR   SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 2.
DR   PROSITE; PS50112; PAS; 2.
DR   PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR   PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR   PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE   4: Predicted;
KW   ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW   Reference proteome {ECO:0000313|Proteomes:UP000006804};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT   DOMAIN          3..51
FT                   /note="PAS"
FT                   /evidence="ECO:0000259|PROSITE:PS50112"
FT   DOMAIN          121..177
FT                   /note="PAS"
FT                   /evidence="ECO:0000259|PROSITE:PS50112"
FT   DOMAIN          255..485
FT                   /note="Sigma-54 factor interaction"
FT                   /evidence="ECO:0000259|PROSITE:PS50045"
SQ   SEQUENCE   568 AA;  63528 MW;  D3DF480ED72A7FA1 CRC64;
     MLRQDLLEMV LDSIIEGVII VDKQARVIYI NKQACLLLGV DQNQVLNRYV VDVIPNTRLH
     IVVQTGVPEF DRLQEIGSTK IITSRVPIRD KNGEVIAAAA IFRDVTSVQK MAEEVTNLKE
     IEATLKAIIE STSDAISVAD AEGRIVLVNS AYTKITGFTA QEVIGKPATV DIAEGESMHI
     KVAQTKQPIY GARLLVGPTK KEVIVNVTPL FVKGQFKGSV AVIHDVSEIM RLTRELEEVK
     RLIRRMGAKY TFEDIVAVSE KMKVALTQAM KVAPTPATVL LRGESGTGKE LFAHAIHNAS
     DRKDKPFISV NCAAIPESIF ESELFGYTAG AFTGARREGK KGLLEEANHG TIFFDEIGKM
     PLSVQSKLLR FIESKEIVPI GDTKPIKVDV RIIASTNMNL EKMVQDGSFL PDLYFRLNVF
     PIFLPPLRER KEDIPLLVQR IIRKLNQEYG RTVEGISPDA LHKLLNYDWP GNVRELENVI
     GRAMINMEPD EKYIRAHHLP PLRISFATAE VSKIGDLRQL VREYEKGLIA KALEESNWNV
     QEAAKILGLS VRTLYYKMKI LNVKRKSN
//
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