ID F9CY57_9ARCH Unreviewed; 304 AA.
AC F9CY57;
DT 19-OCT-2011, integrated into UniProtKB/TrEMBL.
DT 19-OCT-2011, sequence version 1.
DT 24-JAN-2024, entry version 41.
DE SubName: Full=PP-loop domain protein {ECO:0000313|EMBL:EGP92835.1};
GN ORFNames=MY1_0048 {ECO:0000313|EMBL:EGP92835.1};
OS Nitrosarchaeum koreense MY1.
OC Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales;
OC Nitrosopumilaceae; Nitrosarchaeum.
OX NCBI_TaxID=1001994 {ECO:0000313|EMBL:EGP92835.1, ECO:0000313|Proteomes:UP000004440};
RN [1] {ECO:0000313|EMBL:EGP92835.1, ECO:0000313|Proteomes:UP000004440}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MY1 {ECO:0000313|EMBL:EGP92835.1,
RC ECO:0000313|Proteomes:UP000004440};
RX PubMed=21914867; DOI=10.1128/JB.05717-11;
RA Kim B.K., Jung M.Y., Yu D.S., Park S.J., Oh T.K., Rhee S.K., Kim J.F.;
RT "Genome Sequence of an Ammonia-Oxidizing Soil Archaeon, "Candidatus
RT Nitrosoarchaeum koreensis" MY1.";
RL J. Bacteriol. 193:5539-5540(2011).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EGP92835.1}.
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DR EMBL; AFPU01000001; EGP92835.1; -; Genomic_DNA.
DR RefSeq; WP_007549407.1; NZ_AFPU01000001.1.
DR AlphaFoldDB; F9CY57; -.
DR STRING; 1001994.MY1_0048; -.
DR PATRIC; fig|1001994.6.peg.50; -.
DR OrthoDB; 33422at2157; -.
DR Proteomes; UP000004440; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR GO; GO:0000049; F:tRNA binding; IEA:InterPro.
DR GO; GO:0034227; P:tRNA thio-modification; IEA:InterPro.
DR GO; GO:0002098; P:tRNA wobble uridine modification; IEA:InterPro.
DR CDD; cd01993; Alpha_ANH_like_II; 1.
DR Gene3D; 3.40.50.620; HUPs; 1.
DR InterPro; IPR000541; Ncs6/Tuc1/Ctu1.
DR InterPro; IPR014729; Rossmann-like_a/b/a_fold.
DR InterPro; IPR011063; TilS/TtcA_N.
DR InterPro; IPR035107; tRNA_thiolation_TtcA_Ctu1.
DR NCBIfam; TIGR00269; TIGR00269 family protein; 1.
DR PANTHER; PTHR11807; ATPASES OF THE PP SUPERFAMILY-RELATED; 1.
DR PANTHER; PTHR11807:SF12; CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 1; 1.
DR Pfam; PF01171; ATP_bind_3; 1.
DR PIRSF; PIRSF004976; ATPase_YdaO; 1.
DR SUPFAM; SSF52402; Adenine nucleotide alpha hydrolases-like; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|PIRSR:PIRSR004976-51};
KW Metal-binding {ECO:0000256|PIRSR:PIRSR004976-50};
KW Nucleotide-binding {ECO:0000256|PIRSR:PIRSR004976-51};
KW Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Zinc {ECO:0000256|PIRSR:PIRSR004976-50}.
FT DOMAIN 50..239
FT /note="tRNA(Ile)-lysidine/2-thiocytidine synthase N-
FT terminal"
FT /evidence="ECO:0000259|Pfam:PF01171"
FT BINDING 3
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000256|PIRSR:PIRSR004976-50"
FT BINDING 6
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000256|PIRSR:PIRSR004976-50"
FT BINDING 22
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000256|PIRSR:PIRSR004976-50"
FT BINDING 25
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000256|PIRSR:PIRSR004976-50"
FT BINDING 53..55
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000256|PIRSR:PIRSR004976-51"
FT BINDING 59
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000256|PIRSR:PIRSR004976-51"
FT BINDING 83
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000256|PIRSR:PIRSR004976-51"
FT BINDING 163
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000256|PIRSR:PIRSR004976-51"
FT BINDING 168
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000256|PIRSR:PIRSR004976-51"
FT BINDING 278
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000256|PIRSR:PIRSR004976-50"
FT BINDING 281
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000256|PIRSR:PIRSR004976-50"
FT BINDING 290
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000256|PIRSR:PIRSR004976-50"
FT BINDING 293
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000256|PIRSR:PIRSR004976-50"
SQ SEQUENCE 304 AA; 34237 MW; 5D80FBFB0406ADDC CRC64;
MKCDRCENQA AYTRKYSGEK LCSRCFSSSI VRKTAKTISK YNMIQNNELV AVAVSGGKDS
LALLDIINQM TKTHNFRIKA ITIDEGIPGY RNEALEIVQK YCAKLNVEHK VFSYKELFDL
TLEEALDLRE SEKTSSCSIC GTLRRRAIDH AAKDIGADVI ATGHNLDDTL QTFVINMLSG
DTTKIGWMDP DNSSNTLRKI KPFCEIYESE IVFYAFTNDI PFQTEPCPHM NEGIRTEIRE
FLNALEGKHS GIKNNLYQSI VKVSQIVKEG NNKQKTICIK CGNECTGKIC SVCNMVLKLK
ENQT
//
