ID G0IVZ6_CYCMS Unreviewed; 1144 AA.
AC G0IVZ6;
DT 19-OCT-2011, integrated into UniProtKB/TrEMBL.
DT 19-OCT-2011, sequence version 1.
DT 27-MAR-2024, entry version 52.
DE SubName: Full=PKD domain containing protein {ECO:0000313|EMBL:AEL25541.1};
GN OrderedLocusNames=Cycma_1788 {ECO:0000313|EMBL:AEL25541.1};
OS Cyclobacterium marinum (strain ATCC 25205 / DSM 745 / LMG 13164 / NCIMB
OS 1802) (Flectobacillus marinus).
OC Bacteria; Bacteroidota; Cytophagia; Cytophagales; Cyclobacteriaceae;
OC Cyclobacterium.
OX NCBI_TaxID=880070 {ECO:0000313|EMBL:AEL25541.1, ECO:0000313|Proteomes:UP000001635};
RN [1] {ECO:0000313|Proteomes:UP000001635}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 25205 / DSM 745 / LMG 13164 / NCIMB 1802
RC {ECO:0000313|Proteomes:UP000001635};
RA Lucas S., Han J., Lapidus A., Bruce D., Goodwin L., Pitluck S., Peters L.,
RA Kyrpides N., Mavromatis K., Ivanova N., Ovchinnikova G., Chertkov O.,
RA Detter J.C., Tapia R., Han C., Land M., Hauser L., Markowitz V.,
RA Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Tindall B., Schuetze A.,
RA Brambilla E., Klenk H.-P., Eisen J.A.;
RT "The complete genome of Cyclobacterium marinum DSM 745.";
RL Submitted (JUL-2011) to the EMBL/GenBank/DDBJ databases.
CC -!- PTM: Binds 1 heme c group covalently per subunit.
CC {ECO:0000256|PIRSR:PIRSR602324-1}.
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DR EMBL; CP002955; AEL25541.1; -; Genomic_DNA.
DR RefSeq; WP_014019836.1; NC_015914.1.
DR AlphaFoldDB; G0IVZ6; -.
DR STRING; 880070.Cycma_1788; -.
DR KEGG; cmr:Cycma_1788; -.
DR eggNOG; COG2133; Bacteria.
DR eggNOG; COG3291; Bacteria.
DR eggNOG; COG3828; Bacteria.
DR eggNOG; COG4654; Bacteria.
DR HOGENOM; CLU_002470_1_0_10; -.
DR OrthoDB; 9816308at2; -.
DR Proteomes; UP000001635; Chromosome.
DR GO; GO:0009055; F:electron transfer activity; IEA:InterPro.
DR GO; GO:0020037; F:heme binding; IEA:InterPro.
DR GO; GO:0005506; F:iron ion binding; IEA:InterPro.
DR CDD; cd00146; PKD; 1.
DR Gene3D; 3.40.50.880; -; 1.
DR Gene3D; 1.10.760.10; Cytochrome c-like domain; 1.
DR Gene3D; 2.60.40.10; Immunoglobulins; 1.
DR Gene3D; 2.120.10.30; TolB, C-terminal domain; 1.
DR InterPro; IPR011042; 6-blade_b-propeller_TolB-like.
DR InterPro; IPR029062; Class_I_gatase-like.
DR InterPro; IPR009056; Cyt_c-like_dom.
DR InterPro; IPR036909; Cyt_c-like_dom_sf.
DR InterPro; IPR002324; Cyt_c_ID.
DR InterPro; IPR012938; Glc/Sorbosone_DH.
DR InterPro; IPR013783; Ig-like_fold.
DR InterPro; IPR022409; PKD/Chitinase_dom.
DR InterPro; IPR000601; PKD_dom.
DR InterPro; IPR035986; PKD_dom_sf.
DR InterPro; IPR011041; Quinoprot_gluc/sorb_DH.
DR InterPro; IPR029010; ThuA-like.
DR PANTHER; PTHR40469:SF2; GALACTOSE-BINDING DOMAIN-LIKE SUPERFAMILY PROTEIN; 1.
DR PANTHER; PTHR40469; SECRETED GLYCOSYL HYDROLASE; 1.
DR Pfam; PF00034; Cytochrom_C; 1.
DR Pfam; PF07995; GSDH; 1.
DR Pfam; PF18911; PKD_4; 1.
DR Pfam; PF06283; ThuA; 1.
DR PRINTS; PR00606; CYTCHROMECID.
DR SMART; SM00089; PKD; 1.
DR SUPFAM; SSF52317; Class I glutamine amidotransferase-like; 1.
DR SUPFAM; SSF46626; Cytochrome c; 1.
DR SUPFAM; SSF49299; PKD domain; 1.
DR SUPFAM; SSF50952; Soluble quinoprotein glucose dehydrogenase; 1.
DR PROSITE; PS51007; CYTC; 1.
DR PROSITE; PS50093; PKD; 1.
DR PROSITE; PS51257; PROKAR_LIPOPROTEIN; 1.
PE 4: Predicted;
KW Heme {ECO:0000256|ARBA:ARBA00022617, ECO:0000256|PIRSR:PIRSR602324-1};
KW Iron {ECO:0000256|ARBA:ARBA00023004, ECO:0000256|PIRSR:PIRSR602324-1};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723,
KW ECO:0000256|PIRSR:PIRSR602324-1};
KW Reference proteome {ECO:0000313|Proteomes:UP000001635};
KW Signal {ECO:0000256|SAM:SignalP}.
FT SIGNAL 1..27
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 28..1144
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5003401059"
FT DOMAIN 719..797
FT /note="PKD"
FT /evidence="ECO:0000259|PROSITE:PS50093"
FT DOMAIN 870..955
FT /note="Cytochrome c"
FT /evidence="ECO:0000259|PROSITE:PS51007"
FT BINDING 884
FT /ligand="heme c"
FT /ligand_id="ChEBI:CHEBI:61717"
FT /note="covalent"
FT /evidence="ECO:0000256|PIRSR:PIRSR602324-1"
FT BINDING 888
FT /ligand="heme c"
FT /ligand_id="ChEBI:CHEBI:61717"
FT /note="covalent"
FT /evidence="ECO:0000256|PIRSR:PIRSR602324-1"
FT BINDING 933
FT /ligand="heme c"
FT /ligand_id="ChEBI:CHEBI:61717"
FT /note="covalent"
FT /evidence="ECO:0000256|PIRSR:PIRSR602324-1"
SQ SEQUENCE 1144 AA; 126710 MW; 4BA63108E28419EE CRC64;
MSKNSVMKGF CALIFAMFLL GACTSRPGEP KVLVFSKTNG FYHESIPDGN QAIINLGKQN
GIEVDTTTNA KMFTEDILKE YSTVIFLNTT GDVLNNAQQA EFERYIQAGG GFVGIHSAAD
TEYSWDWYGK MVGGYFTDHP GINDPHPNVQ EGSLKIIDKS NSATSFLPET WSRTDEWYSY
KNFNPDVNVL ISLDEDSYQG GADMGEHPIA WYHEYDGGRA FYTGGGHTRA AYKEELFLKH
LLEGIKYAIG ENEKLNYANA TSKSVPDADR FEKVNLVMGE FKEPTEMAIL PNLDILVSQR
RGEVLLYKNG SNEVNKVAHL DVYWKTDVPK VNAEEGLMGI QVDPDFENNH WIYVFYSPTD
ESVNRLSRFK FENDTWDMES EQVILQFYSQ RGICCHTGGS IAFDGNGLLY VSAGDNSTPF
NQPDQKYTLQ GYGPLDDRPG FEQYDAARSS GNSNDLRGKI LRIKVNEDGS YSIPEGNLYP
EGTEKTRPEI YVQGNRNPYR ISVDKKTGFL YWGEVGPDAR EDKFGERGSR GYDEVNQAKE
AGYFGWPFFV GNNYPYNAFN FDTGEVGKEF DPKNPVNNSR NNTGIKNLPP AQPAFIYYPY
VESEAFPEVG TGGRNAMAGP VYYSDLFPNG GGLPEYYDGK LFIYDWIRGW IKVVTMDENG
DYLKMEPFME EVRHNALIDM ELGPNGKLYL LEYGKGWFSA NADAALSVIE YNPGNRSPVI
ASISADKTSG SLPLALTVKV AASDPENDAL SYIWDLGNGE TKETSVPEIS YTYDKQGDYD
ISVTVKDSEN KTAKSNVVNV YAGNIAPSIN VTFEGNGSFY FPNQKVNYEV TVTDPDDPSV
GEDLSSLYLS ADYIEGFDKA EAALGHQVMS EAMAGKSLME SLTCKSCHQI DGKSVGPGYT
DVAKKYADSP EAVDKLINKI IKGGSGVWGE TMMPANPTLK EGDARKIVAF VLSLDGKDDQ
EPSLPAKGEL DPLQGKKLAN NGVMLLNASF TDKGGNNIKP LSTSKTVFLR NNNINLGELD
ATYAYNSMEI NGQQIITSPL GKGYFMLQNI DLTGLEGINF MVSSQRPFDY GYQIEARSGG
SDGEVIGQMV VRKSGEEGAN TQKVVLKFNE NVKEDFQDLY IVTEALNENE TVNMAILSME
MVSK
//
