ID G4D232_9FIRM Unreviewed; 431 AA.
AC G4D232;
DT 14-DEC-2011, integrated into UniProtKB/TrEMBL.
DT 14-DEC-2011, sequence version 1.
DT 24-JAN-2024, entry version 48.
DE SubName: Full=DNA-directed RNA polymerase sigma subunit RpoN {ECO:0000313|EMBL:EGY80412.1};
DE EC=2.7.7.6 {ECO:0000313|EMBL:EGY80412.1};
GN Name=rpoN {ECO:0000313|EMBL:EGY80412.1};
GN ORFNames=HMPREF9129_0462 {ECO:0000313|EMBL:EGY80412.1};
OS Peptoniphilus indolicus ATCC 29427.
OC Bacteria; Bacillota; Tissierellia; Tissierellales; Peptoniphilaceae;
OC Peptoniphilus.
OX NCBI_TaxID=997350 {ECO:0000313|EMBL:EGY80412.1, ECO:0000313|Proteomes:UP000003422};
RN [1] {ECO:0000313|EMBL:EGY80412.1, ECO:0000313|Proteomes:UP000003422}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 29427 {ECO:0000313|EMBL:EGY80412.1,
RC ECO:0000313|Proteomes:UP000003422};
RA Muzny D., Qin X., Deng J., Jiang H., Liu Y., Qu J., Song X.-Z., Zhang L.,
RA Thornton R., Coyle M., Francisco L., Jackson L., Javaid M., Korchina V.,
RA Kovar C., Mata R., Mathew T., Ngo R., Nguyen L., Nguyen N., Okwuonu G.,
RA Ongeri F., Pham C., Simmons D., Wilczek-Boney K., Hale W., Jakkamsetti A.,
RA Pham P., Ruth R., San Lucas F., Warren J., Zhang J., Zhao Z., Zhou C.,
RA Zhu D., Lee S., Bess C., Blankenburg K., Forbes L., Fu Q., Gubbala S.,
RA Hirani K., Jayaseelan J.C., Lara F., Munidasa M., Palculict T., Patil S.,
RA Pu L.-L., Saada N., Tang L., Weissenberger G., Zhu Y., Hemphill L.,
RA Shang Y., Youmans B., Ayvaz T., Ross M., Santibanez J., Aqrawi P.,
RA Gross S., Joshi V., Fowler G., Nazareth L., Reid J., Worley K.,
RA Petrosino J., Highlander S., Gibbs R.;
RL Submitted (JUN-2011) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EGY80412.1}.
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DR EMBL; AGBB01000036; EGY80412.1; -; Genomic_DNA.
DR RefSeq; WP_004819872.1; NZ_JH165061.1.
DR AlphaFoldDB; G4D232; -.
DR STRING; 997350.HMPREF9129_0462; -.
DR PATRIC; fig|997350.3.peg.448; -.
DR eggNOG; COG1508; Bacteria.
DR HOGENOM; CLU_020569_1_0_9; -.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000003422; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-EC.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW ECO:0000313|EMBL:EGY80412.1};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695,
KW ECO:0000313|EMBL:EGY80412.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000003422};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000313|EMBL:EGY80412.1}.
FT DOMAIN 76..258
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 272..426
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
SQ SEQUENCE 431 AA; 49710 MW; 1353C9113DA338A9 CRC64;
MLKLDLKLQP KLNISNGLIQ SLEILSMNSF ELETFLKDES EENVMLDFKS RLEDERYVKS
LKSKVGSVNH SENFIEELAF QEIDLTEYLL EQLRECEIDK DIAKIVHYLI LNLDESGYLK
IKLEEVAKTL SQSIEQVKNA HSMLLKFEPL GIGARNLSEC LISQVPKSET KLRELIEFHL
EDVAKNKISK IAESLGVTEQ EVTLLISSLK KLNPKPGQAY QTQKRVEYVI PDVFVEVDNR
DVLIKMDLVN NIHLNESYLN MLSTEIDEET KEFLKNKLNR TVLLMKSVEM RNKTLKEVME
YVINHQRDFF IYDLPLKPLR QRDVANDLSI SISTVSRAIN GKYLEYKKGA IALKSLFAGA
TLSNTVSKDY IKKKIRELIM AEDNSKPLSD SKIVAILEED GIEIKRRTVQ KYRDELGIAS
SQVRRRYEKT T
//