ID G7IK02_MEDTR Unreviewed; 629 AA.
AC G7IK02;
DT 25-JAN-2012, integrated into UniProtKB/TrEMBL.
DT 25-JAN-2012, sequence version 1.
DT 27-MAR-2024, entry version 54.
DE SubName: Full=Putative XS domain-containing protein {ECO:0000313|EMBL:RHN71571.1};
DE SubName: Full=XS domain protein/XS zinc finger protein {ECO:0000313|EMBL:AES63340.1};
GN Name=11430341 {ECO:0000313|EnsemblPlants:AES63340};
GN OrderedLocusNames=MTR_2g007690 {ECO:0000313|EMBL:AES63340.1};
GN ORFNames=MtrunA17_Chr2g0278291 {ECO:0000313|EMBL:RHN71571.1};
OS Medicago truncatula (Barrel medic) (Medicago tribuloides).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago.
OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES63340.1, ECO:0000313|Proteomes:UP000002051};
RN [1] {ECO:0000313|EMBL:AES63340.1, ECO:0000313|Proteomes:UP000002051}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=A17 {ECO:0000313|EMBL:AES63340.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:AES63340,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=22089132; DOI=10.1038/nature10625;
RA Young N.D., Debelle F., Oldroyd G.E., Geurts R., Cannon S.B., Udvardi M.K.,
RA Benedito V.A., Mayer K.F., Gouzy J., Schoof H., Van de Peer Y., Proost S.,
RA Cook D.R., Meyers B.C., Spannagl M., Cheung F., De Mita S.,
RA Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A.K., Murray J.D.,
RA Naoumkina M.A., Rosen B., Silverstein K.A., Tang H., Rombauts S.,
RA Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A.,
RA Berges H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R.,
RA Deshpande S., Dai X., Doyle J.J., Dudez A.M., Farmer A.D., Fouteau S.,
RA Franken C., Gibelin C., Gish J., Goldstein S., Gonzalez A.J., Green P.J.,
RA Hallab A., Hartog M., Hua A., Humphray S.J., Jeong D.H., Jing Y.,
RA Jocker A., Kenton S.M., Kim D.J., Klee K., Lai H., Lang C., Lin S.,
RA Macmil S.L., Magdelenat G., Matthews L., McCorrison J., Monaghan E.L.,
RA Mun J.H., Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R.,
RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., Sallet E.,
RA Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., Schiex T.,
RA Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., Singer S.R.,
RA Sinharoy S., Sterck L., Viollet A., Wang B.B., Wang K., Wang M., Wang X.,
RA Warfsmann J., Weissenbach J., White D.D., White J.D., Wiley G.B.,
RA Wincker P., Xing Y., Yang L., Yao Z., Ying F., Zhai J., Zhou L., Zuber A.,
RA Denarie J., Dixon R.A., May G.D., Schwartz D.C., Rogers J., Quetier F.,
RA Town C.D., Roe B.A.;
RT "The Medicago genome provides insight into the evolution of rhizobial
RT symbioses.";
RL Nature 480:520-524(2011).
RN [2] {ECO:0000313|EMBL:AES63340.1, ECO:0000313|Proteomes:UP000002051}
RP GENOME REANNOTATION.
RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES63340,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=24767513; DOI=10.1186/1471-2164-15-312;
RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S.,
RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F.,
RA Schwartz D.C., Town C.D.;
RT "An improved genome release (version Mt4.0) for the model legume Medicago
RT truncatula.";
RL BMC Genomics 15:312-312(2014).
RN [3] {ECO:0000313|EnsemblPlants:AES63340}
RP IDENTIFICATION.
RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES63340};
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
RN [4] {ECO:0000313|Proteomes:UP000265566}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Jemalong A17 {ECO:0000313|Proteomes:UP000265566};
RX PubMed=30397259; DOI=10.1038/s41477-018-0286-7;
RA Pecrix Y., Staton S.E., Sallet E., Lelandais-Briere C., Moreau S.,
RA Carrere S., Blein T., Jardinaud M.F., Latrasse D., Zouine M., Zahm M.,
RA Kreplak J., Mayjonade B., Satge C., Perez M., Cauet S., Marande W.,
RA Chantry-Darmon C., Lopez-Roques C., Bouchez O., Berard A., Debelle F.,
RA Munos S., Bendahmane A., Berges H., Niebel A., Buitink J., Frugier F.,
RA Benhamed M., Crespi M., Gouzy J., Gamas P.;
RT "Whole-genome landscape of Medicago truncatula symbiotic genes.";
RL Nat. Plants 4:1017-1025(2018).
RN [5] {ECO:0000313|EMBL:RHN71571.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaves {ECO:0000313|EMBL:RHN71571.1};
RA Pecrix Y., Gamas P., Carrere S.;
RT "Whole-genome landscape of Medicago truncatula symbiotic genes.";
RL Nat. Plants 0:0-0(2018).
CC -!- SIMILARITY: Belongs to the SGS3 family.
CC {ECO:0000256|ARBA:ARBA00024022}.
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DR EMBL; CM001218; AES63340.1; -; Genomic_DNA.
DR EMBL; PSQE01000002; RHN71571.1; -; Genomic_DNA.
DR RefSeq; XP_003593089.1; XM_003593041.2.
DR AlphaFoldDB; G7IK02; -.
DR STRING; 3880.G7IK02; -.
DR PaxDb; 3880-AES63340; -.
DR EnsemblPlants; AES63340; AES63340; MTR_2g007690.
DR GeneID; 11430341; -.
DR Gramene; AES63340; AES63340; MTR_2g007690.
DR KEGG; mtr:11430341; -.
DR eggNOG; ENOG502SMKM; Eukaryota.
DR HOGENOM; CLU_020338_1_0_1; -.
DR OMA; TSKDCEN; -.
DR OrthoDB; 1222097at2759; -.
DR Proteomes; UP000002051; Chromosome 2.
DR Proteomes; UP000265566; Chromosome 2.
DR ExpressionAtlas; G7IK02; differential.
DR GO; GO:0051607; P:defense response to virus; IEA:InterPro.
DR GO; GO:0031047; P:regulatory ncRNA-mediated gene silencing; IEA:UniProtKB-KW.
DR CDD; cd12266; RRM_like_XS; 1.
DR Gene3D; 3.30.70.2890; XS domain; 1.
DR InterPro; IPR044287; SGS3.
DR InterPro; IPR005380; XS_domain.
DR InterPro; IPR038588; XS_domain_sf.
DR InterPro; IPR005381; Znf-XS_domain.
DR PANTHER; PTHR46602; PROTEIN SUPPRESSOR OF GENE SILENCING 3; 1.
DR PANTHER; PTHR46602:SF6; XS DOMAIN-CONTAINING PROTEIN-RELATED; 1.
DR Pfam; PF03468; XS; 1.
DR Pfam; PF03470; zf-XS; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054};
KW Reference proteome {ECO:0000313|Proteomes:UP000002051};
KW RNA-mediated gene silencing {ECO:0000256|ARBA:ARBA00023158}.
FT DOMAIN 257..294
FT /note="Zinc finger-XS"
FT /evidence="ECO:0000259|Pfam:PF03470"
FT DOMAIN 328..442
FT /note="XS"
FT /evidence="ECO:0000259|Pfam:PF03468"
FT REGION 34..102
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 131..226
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 34..65
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 76..96
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 131..192
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 193..215
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 629 AA; 71849 MW; 6F9058765F27BE4C CRC64;
MADESVDAFP TLETVYRVTG YKFNQLSRKL PDAKLNSEQT GESKVIPMPW CSPNSSSNAW
SQPNLIQKLK KRGYSGSGLK SNNLQVKSNS PKPLNGSENG VLDDNRLLHC VEDDTAPSKD
CKDGQCDDEG ISKPNCENND DEGIPKPNCE KNDDEGMPKP NCENIEDEGI PKPNCENIDD
EGIPKPQCEN ADDEIVDSDT DIVFDSDDDL SLDDTDSDTG EKSHEGSKKS KWFRKFFNDL
NKLTVEEISS PATRWHCPAC QDGPGAIDWY HGLQPLLNHS RTIKVRRARL HRAFSETLEE
ECSMRGAPLI RGGEANGLWE GLDNKVKDRE IVWPPMVVIM NTKYEQDENN KWTGMGNQEL
LDCFSDYGAL KARHSYGPHG HRGMSVLIFE PSVAGYLESV QLYKHFKEQG RDREAWDRCK
NPFVPGGKRQ LYGYMASRED LDVFNKHSGK SKLKFEIRSY QEMVESKIKH INDDSKVSEK
LRKTTEENHV VQERTKEHHL QNKEEMNEQE KFFLDQIQII HQSIAAKEDE FTKSQQAKQE
VMCVNGDSSV KEDDNHIMEK NSSFTKSQDK DMRQFEAVRD NILKTHGEKQ LALKKKQWQE
QVELEKELEN ELTQLMNKHA LSHSQEESC
//
