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Database: UniProt
Entry: G7JLA0_MEDTR
LinkDB: G7JLA0_MEDTR
Original site: G7JLA0_MEDTR 
ID   G7JLA0_MEDTR            Unreviewed;      1628 AA.
AC   G7JLA0;
DT   25-JAN-2012, integrated into UniProtKB/TrEMBL.
DT   25-JAN-2012, sequence version 1.
DT   24-JAN-2024, entry version 70.
DE   RecName: Full=DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279};
DE            EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};
GN   Name=11444522 {ECO:0000313|EnsemblPlants:AES90187};
GN   OrderedLocusNames=MTR_4g086290 {ECO:0000313|EMBL:AES90187.1};
GN   ORFNames=MtrunA17_Chr4g0044991 {ECO:0000313|EMBL:RHN62213.1};
OS   Medicago truncatula (Barrel medic) (Medicago tribuloides).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC   NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago.
OX   NCBI_TaxID=3880 {ECO:0000313|EMBL:AES90187.1, ECO:0000313|Proteomes:UP000002051};
RN   [1] {ECO:0000313|EMBL:AES90187.1, ECO:0000313|Proteomes:UP000002051}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=A17 {ECO:0000313|EMBL:AES90187.1}, and cv. Jemalong A17
RC   {ECO:0000313|EnsemblPlants:AES90187,
RC   ECO:0000313|Proteomes:UP000002051};
RX   PubMed=22089132; DOI=10.1038/nature10625;
RA   Young N.D., Debelle F., Oldroyd G.E., Geurts R., Cannon S.B., Udvardi M.K.,
RA   Benedito V.A., Mayer K.F., Gouzy J., Schoof H., Van de Peer Y., Proost S.,
RA   Cook D.R., Meyers B.C., Spannagl M., Cheung F., De Mita S.,
RA   Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A.K., Murray J.D.,
RA   Naoumkina M.A., Rosen B., Silverstein K.A., Tang H., Rombauts S.,
RA   Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A.,
RA   Berges H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R.,
RA   Deshpande S., Dai X., Doyle J.J., Dudez A.M., Farmer A.D., Fouteau S.,
RA   Franken C., Gibelin C., Gish J., Goldstein S., Gonzalez A.J., Green P.J.,
RA   Hallab A., Hartog M., Hua A., Humphray S.J., Jeong D.H., Jing Y.,
RA   Jocker A., Kenton S.M., Kim D.J., Klee K., Lai H., Lang C., Lin S.,
RA   Macmil S.L., Magdelenat G., Matthews L., McCorrison J., Monaghan E.L.,
RA   Mun J.H., Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R.,
RA   Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., Sallet E.,
RA   Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., Schiex T.,
RA   Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., Singer S.R.,
RA   Sinharoy S., Sterck L., Viollet A., Wang B.B., Wang K., Wang M., Wang X.,
RA   Warfsmann J., Weissenbach J., White D.D., White J.D., Wiley G.B.,
RA   Wincker P., Xing Y., Yang L., Yao Z., Ying F., Zhai J., Zhou L., Zuber A.,
RA   Denarie J., Dixon R.A., May G.D., Schwartz D.C., Rogers J., Quetier F.,
RA   Town C.D., Roe B.A.;
RT   "The Medicago genome provides insight into the evolution of rhizobial
RT   symbioses.";
RL   Nature 480:520-524(2011).
RN   [2] {ECO:0000313|EMBL:AES90187.1, ECO:0000313|Proteomes:UP000002051}
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES90187,
RC   ECO:0000313|Proteomes:UP000002051};
RX   PubMed=24767513; DOI=10.1186/1471-2164-15-312;
RA   Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S.,
RA   Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F.,
RA   Schwartz D.C., Town C.D.;
RT   "An improved genome release (version Mt4.0) for the model legume Medicago
RT   truncatula.";
RL   BMC Genomics 15:312-312(2014).
RN   [3] {ECO:0000313|EnsemblPlants:AES90187}
RP   IDENTIFICATION.
RC   STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES90187};
RG   EnsemblPlants;
RL   Submitted (APR-2015) to UniProtKB.
RN   [4] {ECO:0000313|Proteomes:UP000265566}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Jemalong A17 {ECO:0000313|Proteomes:UP000265566};
RX   PubMed=30397259; DOI=10.1038/s41477-018-0286-7;
RA   Pecrix Y., Staton S.E., Sallet E., Lelandais-Briere C., Moreau S.,
RA   Carrere S., Blein T., Jardinaud M.F., Latrasse D., Zouine M., Zahm M.,
RA   Kreplak J., Mayjonade B., Satge C., Perez M., Cauet S., Marande W.,
RA   Chantry-Darmon C., Lopez-Roques C., Bouchez O., Berard A., Debelle F.,
RA   Munos S., Bendahmane A., Berges H., Niebel A., Buitink J., Frugier F.,
RA   Benhamed M., Crespi M., Gouzy J., Gamas P.;
RT   "Whole-genome landscape of Medicago truncatula symbiotic genes.";
RL   Nat. Plants 4:1017-1025(2018).
RN   [5] {ECO:0000313|EMBL:RHN62213.1}
RP   NUCLEOTIDE SEQUENCE.
RC   TISSUE=Leaves {ECO:0000313|EMBL:RHN62213.1};
RA   Pecrix Y., Gamas P., Carrere S.;
RT   "Whole-genome landscape of Medicago truncatula symbiotic genes.";
RL   Nat. Plants 0:0-0(2018).
CC   -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC       DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC       {ECO:0000256|RuleBase:RU004279}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC         RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC         COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC         EC=2.7.7.6; Evidence={ECO:0000256|ARBA:ARBA00024550,
CC         ECO:0000256|RuleBase:RU004279};
CC   -!- SIMILARITY: Belongs to the RNA polymerase beta' chain family.
CC       {ECO:0000256|RuleBase:RU004279}.
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DR   EMBL; CM001220; AES90187.1; -; Genomic_DNA.
DR   EMBL; PSQE01000004; RHN62213.1; -; Genomic_DNA.
DR   RefSeq; XP_003607990.1; XM_003607942.2.
DR   STRING; 3880.G7JLA0; -.
DR   PaxDb; 3880-AES90187; -.
DR   EnsemblPlants; AES90187; AES90187; MTR_4g086290.
DR   GeneID; 11444522; -.
DR   Gramene; AES90187; AES90187; MTR_4g086290.
DR   KEGG; mtr:11444522; -.
DR   eggNOG; KOG0262; Eukaryota.
DR   HOGENOM; CLU_000487_2_3_1; -.
DR   OMA; NREDYQQ; -.
DR   OrthoDB; 7998at2759; -.
DR   Proteomes; UP000002051; Chromosome 4.
DR   Proteomes; UP000265566; Chromosome 4.
DR   ExpressionAtlas; G7JLA0; differential.
DR   GO; GO:0005736; C:RNA polymerase I complex; IBA:GO_Central.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-EC.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0006360; P:transcription by RNA polymerase I; IEA:GOC.
DR   CDD; cd02735; RNAP_I_Rpa1_C; 1.
DR   CDD; cd01435; RNAP_I_RPA1_N; 1.
DR   Gene3D; 1.10.132.30; -; 1.
DR   Gene3D; 1.10.150.390; -; 1.
DR   Gene3D; 2.40.40.20; -; 1.
DR   Gene3D; 3.30.70.2850; -; 1.
DR   Gene3D; 6.10.250.2940; -; 1.
DR   Gene3D; 6.20.50.80; -; 1.
DR   Gene3D; 3.30.1490.180; RNA polymerase ii; 1.
DR   Gene3D; 4.10.860.120; RNA polymerase II, clamp domain; 1.
DR   Gene3D; 1.10.274.100; RNA polymerase Rpb1, domain 3; 1.
DR   InterPro; IPR047107; DNA-dir_RNA_pol1_lsu_C.
DR   InterPro; IPR015699; DNA-dir_RNA_pol1_lsu_N.
DR   InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR   InterPro; IPR000722; RNA_pol_asu.
DR   InterPro; IPR006592; RNA_pol_N.
DR   InterPro; IPR007080; RNA_pol_Rpb1_1.
DR   InterPro; IPR007066; RNA_pol_Rpb1_3.
DR   InterPro; IPR042102; RNA_pol_Rpb1_3_sf.
DR   InterPro; IPR007083; RNA_pol_Rpb1_4.
DR   InterPro; IPR007081; RNA_pol_Rpb1_5.
DR   InterPro; IPR044893; RNA_pol_Rpb1_clamp_domain.
DR   InterPro; IPR038120; Rpb1_funnel_sf.
DR   PANTHER; PTHR19376; DNA-DIRECTED RNA POLYMERASE; 1.
DR   PANTHER; PTHR19376:SF11; DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA1; 1.
DR   Pfam; PF04997; RNA_pol_Rpb1_1; 1.
DR   Pfam; PF00623; RNA_pol_Rpb1_2; 1.
DR   Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR   Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR   Pfam; PF04998; RNA_pol_Rpb1_5; 1.
DR   SMART; SM00663; RPOLA_N; 1.
DR   SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
PE   3: Inferred from homology;
KW   DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW   ECO:0000256|RuleBase:RU004279};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695,
KW   ECO:0000256|RuleBase:RU004279}; Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Reference proteome {ECO:0000313|Proteomes:UP000002051};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163,
KW   ECO:0000256|RuleBase:RU004279};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|RuleBase:RU004279};
KW   Zinc {ECO:0000256|ARBA:ARBA00022833}.
FT   DOMAIN          308..624
FT                   /note="RNA polymerase N-terminal"
FT                   /evidence="ECO:0000259|SMART:SM00663"
FT   REGION          1277..1395
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1277..1300
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1301..1315
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1316..1330
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1351..1372
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1373..1395
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1628 AA;  181739 MW;  38846A960383C25F CRC64;
     MALANEGATN AIESVAFSFL TNEELLKSSR VKVTDTNLCN NIGHPVRGGL YDPAFGPLLD
     NRSNCESCGM SKDHCSGHFG HIELVSPVYN PLMFLFLGKI LNRTCFSCHY FRASRDEVKR
     RASQLELILK GNISKAKSLG EIKLNETIDS VDDDDDDSQW SGAEQLGESW TSLQFSEAMS
     VIYEFLAKDY KKCLNCGCIS PKITKPTFGR FNVKALSSVQ ARANVISSAK AADVQADEED
     ITSGGAGNSN GNNQILSIKL VEQSSLSGSL LPSQVQEMIK LLWKNESRLC SHISDIQDQG
     FGKKAGHSMF FLENIFVPPI KFRPPLKAGD NVAEHPQTVL LSKVLESNIS LADAHRTKSD
     AYYILRRWQD LQGSVNLLFD NKTSLRSQKD ASGICQLLDK KEGIFRQKMM GKRVNYACRS
     VISPDPYLAV NEIGIPPYFA LRLTYPERVT PWNSAKLMDA ILNGPDTHPG AILYTDKTST
     LRLQKDKSLR SSTSRRLQSS RGVIMHHGKI HEHEFEGKVV YRHLKDGDVV LVNRQPTLHK
     PSIMAHVVRV LKGEKTVRMH YANCSTYNAD FDGDEINVHF PQDEISRAEA YNIVNANNQY
     VKPTSGDPIR ALIQDHIVSA ALLTKKDTFL SCQEFNQLLY SSGVSMTGMG SFSCKPGQKV
     LMSNSESEMF LFPPAIFKPE PLWTGKQVIS ALLCYITKGR PPFTVEKNAK IPSSFFKTQT
     GEIKKHTKDT SRKKDELEDK LLIYRNDLVR GVVDKAQFGD YGMVHTVQEF YGSNTAGILL
     SALSRLFTNF LQMHGFTCGV DDLLIKVGKD SERLNQLESC EEIGDIVHRE FIGVMESENI
     DPITMQLNVE KKIRSNGEAA ITYLDRKMIS NLNSRTSSGV LKELLSKGSL KPSGKNWISL
     MTTSGAKGSM VNFQQISSHL GQQELEGKRV PRMVSGKTLP CFPSWDCSPR AGGFIIDRFL
     TALRPQEYYF HCMAGREGLV DTAVKTSRSG YLQRCLMKNL ESLKVCYDHT VRDSDGSIIQ
     FHYGEDGVDV HQTSFINKFE ALSINKELIY SNCCRQLDRS SPYINKLPDA LKGKAENFIR
     DFSSKQRNSS SMKEADFLQV MEHKYVSSLA QPGEPVGVLA SQSVGEPATQ MTLNTFHLAG
     RGEMNVTLGI PRLHEIVVAA SKNIKTPFMT CPLRPNKSME DAIRLADKMK KITVADIIES
     MKVSVVPVAV KEGRICSIYK LTMKLHKPKH YPKYTDVTLE DWEETLRVGF VRELEDAIEN
     HISLLARISG IKDFQGKSNS SNGLDNDHSN ESASNQNGQT DDDDEVGDTE DAEEDGFDAQ
     KSKQRATDEV DYDDGPEEET HDGEKSEDVE VSEDGKDDED DNGVEVNGDD SDIEVNDSDK
     NVTLEETSKS KKRKFEPASK KYDRRVYVKA GGMRFEIHFK FIGEPHILLA QIAQRTAEKV
     CIQNFGKVGQ CKAITCKESG VIYYGEDDSK RDDIPSSVKE KIPALQTSGI HFKTFWEMED
     DLKVRYVYSN DVHAILKAYG VEAAKEVIIR EVQNVFKSYG ISVNIRHLML IADFMTHSGS
     YRPLTRSGIA DSTSPFVKIS YETASNFIVE AARHGQVDTL ETPSSRICLG LPVKMGTGCI
     DLIQKLEI
//
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