ID G7KY78_MEDTR Unreviewed; 707 AA.
AC G7KY78;
DT 25-JAN-2012, integrated into UniProtKB/TrEMBL.
DT 25-JAN-2012, sequence version 1.
DT 27-MAR-2024, entry version 64.
DE SubName: Full=Pentatricopeptide (PPR) repeat protein {ECO:0000313|EMBL:AES79866.1};
DE SubName: Full=Putative tetratricopeptide-like helical domain, DYW domain-containing protein {ECO:0000313|EMBL:RHN46720.1};
GN OrderedLocusNames=MTR_7g074040 {ECO:0000313|EMBL:AES79866.1};
GN ORFNames=MtrunA17_Chr7g0245241 {ECO:0000313|EMBL:RHN46720.1};
OS Medicago truncatula (Barrel medic) (Medicago tribuloides).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago.
OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES79866.1, ECO:0000313|Proteomes:UP000002051};
RN [1] {ECO:0000313|EMBL:AES79866.1, ECO:0000313|Proteomes:UP000002051}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=A17 {ECO:0000313|EMBL:AES79866.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:AES79866,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=22089132; DOI=10.1038/nature10625;
RA Young N.D., Debelle F., Oldroyd G.E., Geurts R., Cannon S.B., Udvardi M.K.,
RA Benedito V.A., Mayer K.F., Gouzy J., Schoof H., Van de Peer Y., Proost S.,
RA Cook D.R., Meyers B.C., Spannagl M., Cheung F., De Mita S.,
RA Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A.K., Murray J.D.,
RA Naoumkina M.A., Rosen B., Silverstein K.A., Tang H., Rombauts S.,
RA Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A.,
RA Berges H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R.,
RA Deshpande S., Dai X., Doyle J.J., Dudez A.M., Farmer A.D., Fouteau S.,
RA Franken C., Gibelin C., Gish J., Goldstein S., Gonzalez A.J., Green P.J.,
RA Hallab A., Hartog M., Hua A., Humphray S.J., Jeong D.H., Jing Y.,
RA Jocker A., Kenton S.M., Kim D.J., Klee K., Lai H., Lang C., Lin S.,
RA Macmil S.L., Magdelenat G., Matthews L., McCorrison J., Monaghan E.L.,
RA Mun J.H., Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R.,
RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., Sallet E.,
RA Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., Schiex T.,
RA Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., Singer S.R.,
RA Sinharoy S., Sterck L., Viollet A., Wang B.B., Wang K., Wang M., Wang X.,
RA Warfsmann J., Weissenbach J., White D.D., White J.D., Wiley G.B.,
RA Wincker P., Xing Y., Yang L., Yao Z., Ying F., Zhai J., Zhou L., Zuber A.,
RA Denarie J., Dixon R.A., May G.D., Schwartz D.C., Rogers J., Quetier F.,
RA Town C.D., Roe B.A.;
RT "The Medicago genome provides insight into the evolution of rhizobial
RT symbioses.";
RL Nature 480:520-524(2011).
RN [2] {ECO:0000313|EMBL:AES79866.1, ECO:0000313|Proteomes:UP000002051}
RP GENOME REANNOTATION.
RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES79866,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=24767513; DOI=10.1186/1471-2164-15-312;
RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S.,
RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F.,
RA Schwartz D.C., Town C.D.;
RT "An improved genome release (version Mt4.0) for the model legume Medicago
RT truncatula.";
RL BMC Genomics 15:312-312(2014).
RN [3] {ECO:0000313|EnsemblPlants:AES79866}
RP IDENTIFICATION.
RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES79866};
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
RN [4] {ECO:0000313|EMBL:RHN46720.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaves {ECO:0000313|EMBL:RHN46720.1};
RA Pecrix Y., Gamas P., Carrere S.;
RT "Whole-genome landscape of Medicago truncatula symbiotic genes.";
RL Nat. Plants 0:0-0(2018).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
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DR EMBL; CM001223; AES79866.1; -; Genomic_DNA.
DR EMBL; PSQE01000007; RHN46720.1; -; Genomic_DNA.
DR RefSeq; XP_003623648.1; XM_003623600.2.
DR AlphaFoldDB; G7KY78; -.
DR PaxDb; 3880-AES79866; -.
DR EnsemblPlants; AES79866; AES79866; MTR_7g074040.
DR Gramene; AES79866; AES79866; MTR_7g074040.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_2_1; -.
DR OMA; EKKVHMF; -.
DR OrthoDB; 464681at2759; -.
DR Proteomes; UP000002051; Chromosome 7.
DR Proteomes; UP000265566; Chromosome 7.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 10.
DR PANTHER; PTHR47924:SF204; DYW_DEAMINASE DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR47924; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 6.
DR Pfam; PF12854; PPR_1; 3.
DR Pfam; PF13041; PPR_2; 1.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51375; PPR; 7.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000002051};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 51..81
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 82..112
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 113..147
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 175..205
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 206..240
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 299..333
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 400..434
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 615..707
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 707 AA; 80242 MW; F19E4C39C3B7BC52 CRC64;
MGYGYAATLR CRMVQARSLC SNTSAISRYG RIGDIHNARK VFDNTPLPQR TIASWNAMVS
AYFESHKPRD ALLLFDQMPQ RNTVSFNGMI SGYVKNGMVA DARKVFDVMP ERNVVSWTSM
VRGYVQEGMV EEAEKLFWEM PRRNVVSWTV MIGGLLKESR IDDAKKLFDM IPEKDVVVVT
NMIGGYCQVG RLDEARELFD EMKVRNVFTW TTMVSGYAKN GRVDVARKLF EVMPERNEVS
WTAMLMGYTQ SGRMKEAFEL FEAMPVKWIV ACNEMILQFG LAGEMHRARM MFEGMKERDE
GTWNAMIKVF ERKGLDLEAL GLFARMQREG VALNFPSMIS VLSVCASLAS LDHGRQVHAR
LVRSEFDQDL YVASVLITMY VKCGDLVRAK GIFNRFLFKD VVMWNSMITG YSQHGLGEEA
LNVFHDMCSS GVQPDEVTFI GVLSACSYSG KVKEGFEIFE AMKCTYQVEP GIEHYACMVD
LLGRAGRVDE AMELVEKMPM EPDAIVWGAL LGACRNHMKL DLAEVAVEKL AKLEPKNAGP
YVLLSHMYAT KGRWRDVEVL RKKINRRVIK FPGCSWIEVE KKVHMFTGGD SKSHPEQHMI
TQMLEKLSGF LREAGYCPDG SFVLHDVDEE EKTHSLGYHS ERLAVAYGLL KVPEGMPIRV
MKNLRVCGDC HSAIKLIAKV TGREIILRDA NRFHHFKDGS CSCKDFW
//
