ID G7W9E1_DESOD Unreviewed; 551 AA.
AC G7W9E1;
DT 25-JAN-2012, integrated into UniProtKB/TrEMBL.
DT 25-JAN-2012, sequence version 1.
DT 27-MAR-2024, entry version 53.
DE RecName: Full=YkuD domain-containing protein {ECO:0008006|Google:ProtNLM};
GN OrderedLocusNames=Desor_3819 {ECO:0000313|EMBL:AET69278.1};
OS Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM
OS B-1628 / Singapore I) (Desulfotomaculum orientis).
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Desulfitobacteriaceae;
OC Desulfosporosinus.
OX NCBI_TaxID=768706 {ECO:0000313|EMBL:AET69278.1, ECO:0000313|Proteomes:UP000006346};
RN [1] {ECO:0000313|Proteomes:UP000006346}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628
RC {ECO:0000313|Proteomes:UP000006346};
RA Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S.,
RA Peters L., Ovchinnikova G., Teshima H., Detter J.C., Han C., Tapia R.,
RA Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Pester M.,
RA Spring S., Ollivier B., Rattei T., Klenk H.-P., Wagner M., Loy A.,
RA Woyke T.;
RT "Complete sequence of Desulfosporosinus orientis DSM 765.";
RL Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:AET69278.1, ECO:0000313|Proteomes:UP000006346}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628
RC {ECO:0000313|Proteomes:UP000006346};
RX PubMed=23105050; DOI=10.1128/JB.01392-12;
RA Pester M., Brambilla E., Alazard D., Rattei T., Weinmaier T., Han J.,
RA Lucas S., Lapidus A., Cheng J.F., Goodwin L., Pitluck S., Peters L.,
RA Ovchinnikova G., Teshima H., Detter J.C., Han C.S., Tapia R., Land M.L.,
RA Hauser L., Kyrpides N.C., Ivanova N.N., Pagani I., Huntmann M., Wei C.L.,
RA Davenport K.W., Daligault H., Chain P.S., Chen A., Mavromatis K.,
RA Markowitz V., Szeto E., Mikhailova N., Pati A., Wagner M., Woyke T.,
RA Ollivier B., Klenk H.P., Spring S., Loy A.;
RT "Complete genome sequences of Desulfosporosinus orientis DSM765T,
RT Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T,
RT and Desulfosporosinus acidiphilus DSM22704T.";
RL J. Bacteriol. 194:6300-6301(2012).
CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis.
CC {ECO:0000256|ARBA:ARBA00004752}.
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DR EMBL; CP003108; AET69278.1; -; Genomic_DNA.
DR AlphaFoldDB; G7W9E1; -.
DR STRING; 768706.Desor_3819; -.
DR MEROPS; C82.001; -.
DR KEGG; dor:Desor_3819; -.
DR PATRIC; fig|768706.3.peg.3863; -.
DR eggNOG; COG1376; Bacteria.
DR HOGENOM; CLU_022707_2_1_9; -.
DR UniPathway; UPA00219; -.
DR Proteomes; UP000006346; Chromosome.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-UniPathway.
DR CDD; cd16913; YkuD_like; 1.
DR Gene3D; 3.10.20.800; -; 1.
DR Gene3D; 2.40.440.10; L,D-transpeptidase catalytic domain-like; 1.
DR InterPro; IPR038054; LD_TPept-like_central_sf.
DR InterPro; IPR005490; LD_TPept_cat_dom.
DR InterPro; IPR038063; Transpep_catalytic_dom.
DR InterPro; IPR022029; YoaR-like_PG-bd.
DR PANTHER; PTHR30582; L,D-TRANSPEPTIDASE; 1.
DR PANTHER; PTHR30582:SF2; SLL0670 PROTEIN; 1.
DR Pfam; PF12229; PG_binding_4; 2.
DR Pfam; PF03734; YkuD; 1.
DR SUPFAM; SSF141523; L,D-transpeptidase catalytic domain-like; 1.
DR SUPFAM; SSF143985; L,D-transpeptidase pre-catalytic domain-like; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils}; Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000006346};
KW Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 101..123
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 170..275
FT /note="YoaR-like putative peptidoglycan binding"
FT /evidence="ECO:0000259|Pfam:PF12229"
FT DOMAIN 295..407
FT /note="YoaR-like putative peptidoglycan binding"
FT /evidence="ECO:0000259|Pfam:PF12229"
FT DOMAIN 432..549
FT /note="L,D-transpeptidase catalytic"
FT /evidence="ECO:0000259|Pfam:PF03734"
FT COILED 41..84
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 551 AA; 62253 MW; 2E486800972F10AF CRC64;
MKVNSKLSIV SKVKYSVLKG VEDTDEEFRK VMEKSIEEGT KEECKKVLEE LKGELKEKTY
EETKDKIEEG IQENQKEAKA KESKFEVLKI HFKPLFKHKK VVTTVIFLGV LFLVYFGMTI
YFMNHFYLGS KINNIDVSGK TVAAAISTLR SQLQDYTLNL KERDGKSERI KAAEVGLAFN
LEDEIRYFKE GQNPFNWVAA IFNSKKSQKT IELSFDDKFL KDRIDRLTCF DSSHVVEPKN
PSFLYTDKGY VIVNEVLGNK VNKDVLFSQV AKAIHMGLSE LDLESSGAYI RPKYTCQSEE
VAKNKELLNK YASAKITYTF GEGRASLDGS IINQWLTLDE NYEVQLDENK VKEYINELSK
THSTVGKTRS FITSSGTTVA VGGGDYGWAI DTARETEDLI LAVKRGQTIT KEPTYSQKAF
VLPNENNDIG NTYVEIDLSK QHVWFYKNGS LIVEGSVVSG NVSAGHSTPK GVYRLKYKQR
NAILRGDDYA VPVSYWMPFN GGIGLHDANW RSAFGGNIYM INGSHGCINM PYNVAQAVFN
NIDVYTPVVC Y
//
