ID GOGA5_ORYSJ Reviewed; 709 AA.
AC Q5JLY8; Q0JJD9;
DT 25-JUL-2006, integrated into UniProtKB/Swiss-Prot.
DT 15-FEB-2005, sequence version 1.
DT 27-MAR-2024, entry version 89.
DE RecName: Full=Golgin-84;
GN OrderedLocusNames=Os01g0744400, LOC_Os01g54119;
GN ORFNames=OsJ_03424 {ECO:0000312|EMBL:EEE55369.1}, OSJNBa0014K08.9;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: May be involved in maintaining Golgi structure and in intra-
CC Golgi transport. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Golgi apparatus membrane {ECO:0000305}; Single-
CC pass type II membrane protein {ECO:0000305}.
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DR EMBL; AP003376; BAD87519.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF06139.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS74307.1; -; Genomic_DNA.
DR EMBL; CM000138; EEE55369.1; -; Genomic_DNA.
DR EMBL; AK067648; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015651194.1; XM_015795708.1.
DR AlphaFoldDB; Q5JLY8; -.
DR SMR; Q5JLY8; -.
DR STRING; 39947.Q5JLY8; -.
DR PaxDb; 39947-Q5JLY8; -.
DR EnsemblPlants; Os01t0744400-01; Os01t0744400-01; Os01g0744400.
DR GeneID; 4326171; -.
DR Gramene; Os01t0744400-01; Os01t0744400-01; Os01g0744400.
DR KEGG; osa:4326171; -.
DR eggNOG; ENOG502QT7E; Eukaryota.
DR HOGENOM; CLU_405131_0_0_1; -.
DR InParanoid; Q5JLY8; -.
DR OMA; CSSYEAH; -.
DR OrthoDB; 1218181at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000007752; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; Q5JLY8; OS.
DR GO; GO:0031985; C:Golgi cisterna; IBA:GO_Central.
DR GO; GO:0000139; C:Golgi membrane; IBA:GO_Central.
DR GO; GO:0007030; P:Golgi organization; IBA:GO_Central.
DR GO; GO:0000301; P:retrograde transport, vesicle recycling within Golgi; IBA:GO_Central.
DR InterPro; IPR019177; Golgin_subfamily_A_member_5.
DR PANTHER; PTHR13815:SF7; GOLGIN SUBFAMILY A MEMBER 5; 1.
DR PANTHER; PTHR13815; GOLGIN-84; 1.
DR Pfam; PF09787; Golgin_A5; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; Golgi apparatus; Membrane; Reference proteome; Signal-anchor;
KW Transmembrane; Transmembrane helix.
FT CHAIN 1..709
FT /note="Golgin-84"
FT /id="PRO_0000247497"
FT TOPO_DOM 1..664
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 665..684
FT /note="Helical; Signal-anchor for type II membrane protein"
FT /evidence="ECO:0000255"
FT TOPO_DOM 685..707
FT /note="Lumenal"
FT /evidence="ECO:0000255"
FT REGION 24..132
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 144..195
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 211..265
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 287..592
FT /evidence="ECO:0000255"
FT COMPBIAS 25..44
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 67..89
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 95..109
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 111..132
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 229..265
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 297
FT /note="Q -> R (in Ref. 6; AK067648)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 709 AA; 79190 MW; 10199B6D2FA96362 CRC64;
MASWLKVAED LLEVVDRRAK IVATELSDEQ SSPQPSGSSS QEGQAKKGKL REKGPLKLAT
GDAGSRTAAQ KERKSRQPPR ERIKIEKIRP SPPVDSSSVD ASASKPDVSS SDVKGLDDDG
GAEKEEKVVV DRKNDIGAEV VDTEVEVQST ERSAEDAAIV VDGAADSGNS EGAAESSAPS
VPDERCEPSI SNQDAEIVSA VNLEEKDSAM EVIHEKNIKE VPDTQVSGKS QDSKREGLSD
SPESTENQQE HKLDSGSVKD QDQLEEARGL LKNVVKTGQS KEARLARVCA GLSSRLQEYK
SENAQLEELL VQEREKCSSY EAHMKQLQQE LSMSRVEGSR AESNMVDALT AKNAEIESLV
KSLDSWKKKA AASEEKLAAL QEDMDGLKRN RELTETRVIQ ALREELATVE RRAEEERIAH
NATKMAAVER EVELEHRAVE ASNALARIQR AADQSSSRAM ELEHKVAVLE VECASLQQEL
QEMEARNRRA QKKPSEEANQ VIQMQAWQEE VERARQSQRE AETKISSLEA ELQKMRVEMA
GMKRDAEHYS RQEHVELEKR YRELTDLLYH KQTQLESMAS EKAALEFQLE KSIKQFHEVQ
MEAERSRVAR RSASAWEEDA DIKALEPLPL HHRHMATANQ QLQKAAKLLD SGAVRATRFL
WRHPVARVSL LFYLVFVHLF LMYLMHRLQD FASREGPTAM GGLANSDLP
//
