ID H0YS05_TAEGU Unreviewed; 610 AA.
AC H0YS05;
DT 22-FEB-2012, integrated into UniProtKB/TrEMBL.
DT 17-JUN-2020, sequence version 2.
DT 27-MAR-2024, entry version 66.
DE SubName: Full=Elongation factor for RNA polymerase II {ECO:0000313|Ensembl:ENSTGUP00000001065.2};
GN Name=ELL {ECO:0000313|Ensembl:ENSTGUP00000001065.2};
OS Taeniopygia guttata (Zebra finch) (Poephila guttata).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae;
OC Estrildinae; Taeniopygia.
OX NCBI_TaxID=59729 {ECO:0000313|Ensembl:ENSTGUP00000001065.2, ECO:0000313|Proteomes:UP000007754};
RN [1] {ECO:0000313|Ensembl:ENSTGUP00000001065.2, ECO:0000313|Proteomes:UP000007754}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=20360741; DOI=10.1038/nature08819;
RA Warren W.C., Clayton D.F., Ellegren H., Arnold A.P., Hillier L.W.,
RA Kunstner A., Searle S., White S., Vilella A.J., Fairley S., Heger A.,
RA Kong L., Ponting C.P., Jarvis E.D., Mello C.V., Minx P., Lovell P.,
RA Velho T.A., Ferris M., Balakrishnan C.N., Sinha S., Blatti C., London S.E.,
RA Li Y., Lin Y.C., George J., Sweedler J., Southey B., Gunaratne P.,
RA Watson M., Nam K., Backstrom N., Smeds L., Nabholz B., Itoh Y., Whitney O.,
RA Pfenning A.R., Howard J., Volker M., Skinner B.M., Griffin D.K., Ye L.,
RA McLaren W.M., Flicek P., Quesada V., Velasco G., Lopez-Otin C.,
RA Puente X.S., Olender T., Lancet D., Smit A.F., Hubley R., Konkel M.K.,
RA Walker J.A., Batzer M.A., Gu W., Pollock D.D., Chen L., Cheng Z.,
RA Eichler E.E., Stapley J., Slate J., Ekblom R., Birkhead T., Burke T.,
RA Burt D., Scharff C., Adam I., Richard H., Sultan M., Soldatov A.,
RA Lehrach H., Edwards S.V., Yang S.P., Li X., Graves T., Fulton L.,
RA Nelson J., Chinwalla A., Hou S., Mardis E.R., Wilson R.K.;
RT "The genome of a songbird.";
RL Nature 464:757-762(2010).
RN [2] {ECO:0000313|Ensembl:ENSTGUP00000001065.2}
RP IDENTIFICATION.
RG Ensembl;
RL Submitted (NOV-2023) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the ELL/occludin family.
CC {ECO:0000256|ARBA:ARBA00009171, ECO:0000256|PROSITE-ProRule:PRU01324}.
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DR STRING; 59729.ENSTGUP00000034113; -.
DR Ensembl; ENSTGUT00000001077.2; ENSTGUP00000001065.2; ENSTGUG00000001031.2.
DR Ensembl; ENSTGUT00000032591.1; ENSTGUP00000038077.1; ENSTGUG00000001031.2.
DR Ensembl; ENSTGUT00000039961.1; ENSTGUP00000034113.1; ENSTGUG00000001031.2.
DR GeneTree; ENSGT00940000155914; -.
DR HOGENOM; CLU_021268_0_0_1; -.
DR OMA; CQPQNSG; -.
DR TreeFam; TF326161; -.
DR Proteomes; UP000007754; Chromosome 28.
DR GO; GO:0008023; C:transcription elongation factor complex; IEA:InterPro.
DR GO; GO:0006368; P:transcription elongation by RNA polymerase II; IEA:InterPro.
DR Gene3D; 6.10.140.340; -; 1.
DR Gene3D; 1.10.10.2670; E3 ubiquitin-protein ligase; 1.
DR InterPro; IPR042065; E3_ELL-like.
DR InterPro; IPR031176; ELL/occludin.
DR InterPro; IPR019464; ELL_N.
DR InterPro; IPR010844; Occludin_ELL.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR23288; OCCLUDIN AND RNA POLYMERASE II ELONGATION FACTOR ELL; 1.
DR PANTHER; PTHR23288:SF9; RNA POLYMERASE II ELONGATION FACTOR ELL; 1.
DR Pfam; PF10390; ELL; 1.
DR Pfam; PF07303; Occludin_ELL; 1.
DR SUPFAM; SSF144292; occludin/ELL-like; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR PROSITE; PS51980; OCEL; 1.
PE 3: Inferred from homology;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000007754};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 500..610
FT /note="OCEL"
FT /evidence="ECO:0000259|PROSITE:PS51980"
FT REGION 292..321
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 344..460
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 292..316
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 430..446
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 610 AA; 68214 MW; 74F13450C18959DF CRC64;
MAALQAERGY GLSCGRLGRG TRVSVFHVKL TESALRAFES YQACKDAVTS KPVIQFQGSQ
GHIAIPRPDR PAEVRTFTFY LSNIGKDSPQ GSFDCIQQYV SSNGNIHLDC LGSIQDKITV
CATDDSYQKA RQSMAQAEEE TRSRSAIVIK PGGRYVGKKV QVRKPAPGAS DAVPSRKRPT
PVNLASAIKR GNSAISQRPF KDRVVHLLAL KPYKKPELIL RLQKDGLSQQ DKDLLDNLLQ
QVANLSAKDS TFTLKDCVYK EVQKDWPGYS EGDQQLLKRI LVRKLCQPQN SSAFQGEAPS
LSPPKDTLNS SSPPQKRPLP AEFIDPLANK KPRISHLAHR AQPTLNGKLN SSNGKDSLAP
PALPVPLPEP VGSSSSLPAL ELPRPHDPLA DVSNDLAHNG RDCESTEPPE RLSHPLPTDC
AQSSKHNCGS YVKSKKKSKK HKDKEKERKE KKSEEKCKEE KQNCEVIKNA DLVSVPQEQV
PGLNGTCNNS SVPTSTSEMP DYLLKYAAIS SSEQRQSYKN DFNAEYSEYR DLHARIERIT
RRFTQLDAKL KQLLQGSEEY KTIHDQILQE YRKIKKTNPN YSQEKNRCEY LHNKLAHIKK
LIAEYDQQQF
//
