ID H2M8W2_ORYLA Unreviewed; 677 AA.
AC H2M8W2;
DT 21-MAR-2012, integrated into UniProtKB/TrEMBL.
DT 21-MAR-2012, sequence version 1.
DT 27-MAR-2024, entry version 73.
DE SubName: Full=Collagen, type IX, alpha 3 {ECO:0000313|Ensembl:ENSORLP00000014936.1};
GN Name=col9a3 {ECO:0000313|Ensembl:ENSORLP00000014936.1};
OS Oryzias latipes (Japanese rice fish) (Japanese killifish).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae;
OC Oryzias.
OX NCBI_TaxID=8090 {ECO:0000313|Ensembl:ENSORLP00000014936.1, ECO:0000313|Proteomes:UP000001038};
RN [1] {ECO:0000313|Ensembl:ENSORLP00000014936.1, ECO:0000313|Proteomes:UP000001038}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Hd-rR {ECO:0000313|Ensembl:ENSORLP00000014936.1,
RC ECO:0000313|Proteomes:UP000001038};
RX PubMed=17554307; DOI=10.1038/nature05846;
RA Kasahara M., Naruse K., Sasaki S., Nakatani Y., Qu W., Ahsan B., Yamada T.,
RA Nagayasu Y., Doi K., Kasai Y., Jindo T., Kobayashi D., Shimada A.,
RA Toyoda A., Kuroki Y., Fujiyama A., Sasaki T., Shimizu A., Asakawa S.,
RA Shimizu N., Hashimoto S., Yang J., Lee Y., Matsushima K., Sugano S.,
RA Sakaizumi M., Narita T., Ohishi K., Haga S., Ohta F., Nomoto H., Nogata K.,
RA Morishita T., Endo T., Shin-I T., Takeda H., Morishita S., Kohara Y.;
RT "The medaka draft genome and insights into vertebrate genome evolution.";
RL Nature 447:714-719(2007).
RN [2] {ECO:0000313|Ensembl:ENSORLP00000014936.1}
RP IDENTIFICATION.
RC STRAIN=Hd-rR {ECO:0000313|Ensembl:ENSORLP00000014936.1};
RG Ensembl;
RL Submitted (NOV-2023) to UniProtKB.
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DR RefSeq; XP_004070849.1; XM_004070801.2.
DR AlphaFoldDB; H2M8W2; -.
DR STRING; 8090.ENSORLP00000014936; -.
DR Ensembl; ENSORLT00000014937.2; ENSORLP00000014936.1; ENSORLG00000011918.2.
DR GeneID; 101155514; -.
DR KEGG; ola:101155514; -.
DR CTD; 1299; -.
DR eggNOG; KOG3544; Eukaryota.
DR GeneTree; ENSGT00940000161930; -.
DR HOGENOM; CLU_001074_18_2_1; -.
DR InParanoid; H2M8W2; -.
DR OMA; MINEQIA; -.
DR OrthoDB; 5363474at2759; -.
DR Proteomes; UP000001038; Chromosome 7.
DR Bgee; ENSORLG00000011918; Expressed in sexually immature organism and 9 other cell types or tissues.
DR GO; GO:0062023; C:collagen-containing extracellular matrix; IBA:GO_Central.
DR GO; GO:0005615; C:extracellular space; IBA:GO_Central.
DR GO; GO:0030020; F:extracellular matrix structural constituent conferring tensile strength; IBA:GO_Central.
DR GO; GO:0030198; P:extracellular matrix organization; IBA:GO_Central.
DR InterPro; IPR008160; Collagen.
DR PANTHER; PTHR24023; COLLAGEN ALPHA; 1.
DR PANTHER; PTHR24023:SF1034; COLLAGEN ALPHA-1(XVIII) CHAIN; 1.
DR Pfam; PF01391; Collagen; 7.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000001038};
KW Signal {ECO:0000256|SAM:SignalP}.
FT SIGNAL 1..21
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 22..677
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5003565589"
FT REGION 19..228
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 258..377
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 404..513
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 545..677
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 100..117
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 139..156
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 190..206
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 306..321
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 677 AA; 64073 MW; 21E6CC4D8C961FEB CRC64;
MTVFSAVGAL LLCQLLASSS AQRPGPRGPK GLPGPPGLPG RDGTDGKPGP PGFSGKPGPK
GKAGTPGLPG KAGLPGLPGI DGLTGPDGPP GKDGPAGEQG EPGPPGPPGP PGRGRPGAPG
LPGTNGFPGA VGPQGPVGPE GLPGLPGPPG PDGPPGLPGT LQDLNGDLLC PAICPPGPPG
PPGMPGFKGH TGHKGDKGEQ GKDGEKGDQG PTGPPGIPGT VGLQGPRGLR GLQGPIGPGG
DRGFPGFRGK PGIAGIIGKT GDPGERGPQG FKGPKGEVGK IGPKGAPGGA GPKGDPGMPG
RDGKDGTQGL DGEKGDAGRH GTVGEKGPNG LPGLAGKVGA KGSKGEVGDP GKSGETGPSG
EPGLPGEIGI PGERGIAGPR GVAGGIGPAG NPGPLGVKGF QGIKGALGDP GLPGPTGIRG
EFGDRGPVGA SGAKGDMGVA GSDGLPGENG EPGAFGPVGQ KGESGKRGEL GPKGVTGPQG
ELGARGPPGK QGPIGFQGEQ GVPGLPGKRG VPGKLASEQH IRELCGSMID DQIAQLAANL
RRPLAPGMVG RPGPAGSPGE PGSAGSIGHP GPRGPPGYRG LPGELGDPGP RGDVGDQGDK
GSVGKAVDGP PGDQGHQGQP GVPGIVKDGR DGSPGDPGEP GEAGRVGRTG HQGPPGICDT
SACQGASVAG KSSNPKN
//
