ID H2YW17_CIOSA Unreviewed; 1151 AA.
AC H2YW17;
DT 18-APR-2012, integrated into UniProtKB/TrEMBL.
DT 18-APR-2012, sequence version 1.
DT 24-JAN-2024, entry version 52.
DE RecName: Full=SMC hinge domain-containing protein {ECO:0000259|SMART:SM00968};
OS Ciona savignyi (Pacific transparent sea squirt).
OC Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
OC Cionidae; Ciona.
OX NCBI_TaxID=51511 {ECO:0000313|Ensembl:ENSCSAVP00000009528.1, ECO:0000313|Proteomes:UP000007875};
RN [1] {ECO:0000313|Proteomes:UP000007875}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA Birren B., Nusbaum C., Abebe A., Abouelleil A., Adekoya E., Ait-zahra M.,
RA Allen N., Allen T., An P., Anderson M., Anderson S., Arachchi H.,
RA Armbruster J., Bachantsang P., Baldwin J., Barry A., Bayul T.,
RA Blitshsteyn B., Bloom T., Blye J., Boguslavskiy L., Borowsky M.,
RA Boukhgalter B., Brunache A., Butler J., Calixte N., Calvo S., Camarata J.,
RA Campo K., Chang J., Cheshatsang Y., Citroen M., Collymore A., Considine T.,
RA Cook A., Cooke P., Corum B., Cuomo C., David R., Dawoe T., Degray S.,
RA Dodge S., Dooley K., Dorje P., Dorjee K., Dorris L., Duffey N., Dupes A.,
RA Elkins T., Engels R., Erickson J., Farina A., Faro S., Ferreira P.,
RA Fischer H., Fitzgerald M., Foley K., Gage D., Galagan J., Gearin G.,
RA Gnerre S., Gnirke A., Goyette A., Graham J., Grandbois E., Gyaltsen K.,
RA Hafez N., Hagopian D., Hagos B., Hall J., Hatcher B., Heller A.,
RA Higgins H., Honan T., Horn A., Houde N., Hughes L., Hulme W., Husby E.,
RA Iliev I., Jaffe D., Jones C., Kamal M., Kamat A., Kamvysselis M.,
RA Karlsson E., Kells C., Kieu A., Kisner P., Kodira C., Kulbokas E.,
RA Labutti K., Lama D., Landers T., Leger J., Levine S., Lewis D., Lewis T.,
RA Lindblad-toh K., Liu X., Lokyitsang T., Lokyitsang Y., Lucien O., Lui A.,
RA Ma L.J., Mabbitt R., Macdonald J., Maclean C., Major J., Manning J.,
RA Marabella R., Maru K., Matthews C., Mauceli E., Mccarthy M., Mcdonough S.,
RA Mcghee T., Meldrim J., Meneus L., Mesirov J., Mihalev A., Mihova T.,
RA Mikkelsen T., Mlenga V., Moru K., Mozes J., Mulrain L., Munson G.,
RA Naylor J., Newes C., Nguyen C., Nguyen N., Nguyen T., Nicol R., Nielsen C.,
RA Nizzari M., Norbu C., Norbu N., O'donnell P., Okoawo O., O'leary S.,
RA Omotosho B., O'neill K., Osman S., Parker S., Perrin D., Phunkhang P.,
RA Piqani B., Purcell S., Rachupka T., Ramasamy U., Rameau R., Ray V.,
RA Raymond C., Retta R., Richardson S., Rise C., Rodriguez J., Rogers J.,
RA Rogov P., Rutman M., Schupbach R., Seaman C., Settipalli S., Sharpe T.,
RA Sheridan J., Sherpa N., Shi J., Smirnov S., Smith C., Sougnez C.,
RA Spencer B., Stalker J., Stange-thomann N., Stavropoulos S., Stetson K.,
RA Stone C., Stone S., Stubbs M., Talamas J., Tchuinga P., Tenzing P.,
RA Tesfaye S., Theodore J., Thoulutsang Y., Topham K., Towey S., Tsamla T.,
RA Tsomo N., Vallee D., Vassiliev H., Venkataraman V., Vinson J., Vo A.,
RA Wade C., Wang S., Wangchuk T., Wangdi T., Whittaker C., Wilkinson J.,
RA Wu Y., Wyman D., Yadav S., Yang S., Yang X., Yeager S., Yee E., Young G.,
RA Zainoun J., Zembeck L., Zimmer A., Zody M., Lander E.;
RL Submitted (AUG-2003) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Ensembl:ENSCSAVP00000009528.1}
RP IDENTIFICATION.
RG Ensembl;
RL Submitted (JUL-2023) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Chromosome {ECO:0000256|ARBA:ARBA00004286}.
CC Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the SMC family. SMC1 subfamily.
CC {ECO:0000256|ARBA:ARBA00005597}.
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DR AlphaFoldDB; H2YW17; -.
DR Ensembl; ENSCSAVT00000009645.1; ENSCSAVP00000009528.1; ENSCSAVG00000005597.1.
DR GeneTree; ENSGT00940000155614; -.
DR Proteomes; UP000007875; Unassembled WGS sequence.
DR GO; GO:0008278; C:cohesin complex; IEA:InterPro.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0007062; P:sister chromatid cohesion; IEA:InterPro.
DR CDD; cd03275; ABC_SMC1_euk; 1.
DR Gene3D; 1.20.1060.20; -; 1.
DR Gene3D; 3.30.70.1620; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR003395; RecF/RecN/SMC_N.
DR InterPro; IPR024704; SMC.
DR InterPro; IPR028468; Smc1_ABC.
DR InterPro; IPR010935; SMC_hinge.
DR InterPro; IPR036277; SMC_hinge_sf.
DR PANTHER; PTHR18937:SF12; STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN; 1.
DR PANTHER; PTHR18937; STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER; 1.
DR Pfam; PF06470; SMC_hinge; 1.
DR Pfam; PF02463; SMC_N; 1.
DR PIRSF; PIRSF005719; SMC; 1.
DR SMART; SM00968; SMC_hinge; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF75553; Smc hinge domain; 1.
PE 3: Inferred from homology;
KW Chromosome {ECO:0000256|ARBA:ARBA00022454};
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000007875}.
FT DOMAIN 486..605
FT /note="SMC hinge"
FT /evidence="ECO:0000259|SMART:SM00968"
FT REGION 390..420
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 154..205
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 242..287
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 426..453
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 797..866
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 925..980
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 402..420
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1151 AA; 135197 MW; 460387D3137CE5D5 CRC64;
LESIEVENFK SYRGKILIPF KKFTAIIGPN GSGKSNLMDA ISFVLGEKTS SLRVKKLSDL
IHGAPIGKPI SNRARVTATY CTESGEKMEF SRSIKSENRI NDKVVTHAEY NKEMEKINIF
IKVKNFLVFQ GQVESIAMKN PKERTQLFEE ISGSGEFKED YEKAKSEMTK AEQETQYSFH
RKKGIAAERK EAKQEKDEAD KYRKLRDDFS NLRLQLMLFK LFYSEREIEA ITDETEGKNK
DIRHHLRKRE KYEEEIKKKK QEQGKFMREL SALEKKIQEK ETELNRKRPM YIKCISVPYA
HTAKENTNFV MKKIESAKKS LRTAENRHES HMHVIQDLQK QLEEIEEKRR DQNEGRDLEL
EESQITEYNR LKEEAAKRST ALNTEIEKLQ REQQTDQENE LWSQQKQKKK ELEESSSRVE
KLRDYIETSR NTLQEHKKLK VELEQQINIE LEEVMKKQGD AKVDRTESSR QKRRLELLET
LRRLFPGVYG RVLDQCEPVH NRYKIAITKV LGKYMYAIVC DTEKTARDCI QYMKEQCAEP
ETFLPLDYID AKPINDQLRE IKEPRGVKLV IDVIKYELPA IKRALQFTCG NSLVCENADD
ARKVAFGQVQ RHKAVALDGT LFQKSGVISG GATDLKRKAQ RWDEKVLDHL QSRKEKLTEE
LKQGWWALGV FKIEELDHLL QDFEPRFMEV EERMRSREGE INNYRASMNE VRCASDQVFR
NFCVLIGVPN IRVYEERELR RQQETLKKRL EFDNQKSRVT NQLEYENSLD THQNVVKWQE
MIRNDEANID LHKREEKKAM KDELQEVKTR KIQKRRDCDE KTSEIEDVRK DLGKLNKEMT
HFQKVITAQE LKMEQKREQK HSLLQQCKME DIPLPLKKGA IEDIDESVNI KFIFVLSVCH
RQAAMEIDYR KLPHDLKVLK PHLELDEVKR EGERLQSRMN EVSSTIQRFS APNMKALSHL
DEVKKQYHES KDQFDSFRKR ARKLRQDFEM VKKKRVEHFN QCFDYVATKI DDIYKDLSRN
NSAQAFLGPE NTEEPYLEEA PHTTAWPLGN RFRPMDNLSG GEKTVAALAL IFAIHDYQPS
PFFVLDEIDA ALDNTNIGKV AEYIKQMSNR VQCIVISLKE EFYNRVDALV GIYPQVNHMI
ALSGCQLKTG R
//