ID H3C6D7_TETNG Unreviewed; 995 AA.
AC H3C6D7;
DT 18-APR-2012, integrated into UniProtKB/TrEMBL.
DT 18-APR-2012, sequence version 1.
DT 24-JAN-2024, entry version 68.
DE RecName: Full=Pogo transposable element derived with ZNF domain b {ECO:0008006|Google:ProtNLM};
OS Tetraodon nigroviridis (Spotted green pufferfish) (Chelonodon
OS nigroviridis).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Tetraodon.
OX NCBI_TaxID=99883 {ECO:0000313|Ensembl:ENSTNIP00000003807.1, ECO:0000313|Proteomes:UP000007303};
RN [1] {ECO:0000313|Proteomes:UP000007303}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=15496914; DOI=10.1038/nature03025;
RA Jaillon O., Aury J.-M., Brunet F., Petit J.-L., Stange-Thomann N.,
RA Mauceli E., Bouneau L., Fischer C., Ozouf-Costaz C., Bernot A., Nicaud S.,
RA Jaffe D., Fisher S., Lutfalla G., Dossat C., Segurens B., Dasilva C.,
RA Salanoubat M., Levy M., Boudet N., Castellano S., Anthouard V., Jubin C.,
RA Castelli V., Katinka M., Vacherie B., Biemont C., Skalli Z., Cattolico L.,
RA Poulain J., De Berardinis V., Cruaud C., Duprat S., Brottier P.,
RA Coutanceau J.-P., Gouzy J., Parra G., Lardier G., Chapple C.,
RA McKernan K.J., McEwan P., Bosak S., Kellis M., Volff J.-N., Guigo R.,
RA Zody M.C., Mesirov J., Lindblad-Toh K., Birren B., Nusbaum C., Kahn D.,
RA Robinson-Rechavi M., Laudet V., Schachter V., Quetier F., Saurin W.,
RA Scarpelli C., Wincker P., Lander E.S., Weissenbach J., Roest Crollius H.;
RT "Genome duplication in the teleost fish Tetraodon nigroviridis reveals the
RT early vertebrate proto-karyotype.";
RL Nature 431:946-957(2004).
RN [2] {ECO:0000313|Ensembl:ENSTNIP00000003807.1}
RP IDENTIFICATION.
RG Ensembl;
RL Submitted (JUL-2023) to UniProtKB.
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DR AlphaFoldDB; H3C6D7; -.
DR STRING; 99883.ENSTNIP00000003807; -.
DR Ensembl; ENSTNIT00000002223.1; ENSTNIP00000003807.1; ENSTNIG00000002941.1.
DR GeneTree; ENSGT00940000163854; -.
DR InParanoid; H3C6D7; -.
DR OMA; KSMKNTC; -.
DR TreeFam; TF331707; -.
DR Proteomes; UP000007303; Unassembled WGS sequence.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR Gene3D; 3.30.160.60; Classic Zinc Finger; 2.
DR InterPro; IPR004875; DDE_SF_endonuclease_dom.
DR InterPro; IPR006600; HTH_CenpB_DNA-bd_dom.
DR InterPro; IPR013087; Znf_C2H2_type.
DR PANTHER; PTHR24388:SF45; POGO TRANSPOSABLE ELEMENT-DERIVED WITH ZNF DOMAIN A; 1.
DR PANTHER; PTHR24388; ZINC FINGER PROTEIN; 1.
DR Pfam; PF03184; DDE_1; 1.
DR Pfam; PF03221; HTH_Tnp_Tc5; 1.
DR SMART; SM00674; CENPB; 1.
DR SMART; SM00355; ZnF_C2H2; 8.
DR PROSITE; PS51253; HTH_CENPB; 1.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 3.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00042};
KW Reference proteome {ECO:0000313|Proteomes:UP000007303};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00042};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00042}.
FT DOMAIN 112..140
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 612..684
FT /note="HTH CENPB-type"
FT /evidence="ECO:0000259|PROSITE:PS51253"
FT REGION 1..35
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 312..342
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 533..567
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 973..995
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 312..339
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 546..567
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 995 AA; 111392 MW; 66CA75B03E8492BD CRC64;
AAGAPPAAAP AAPGPSTPTS TLADDLAAPG PSPPITSVAS SNLPKVVMSV DDFYYGTFQG
DLSLRKTQLM PAKTCGFTCL TCSYLAENNL RLMQHMLQHS ALVGEKAAED RNFCRFCYRQ
FSSSSQLQNH QEQVHGPAQS ASMCRICEWA FETEPVFLSH MKSNHKPGEM PYVCQPPGLL
TQVCSFRSSF YSDVLRHFAS FHTDSRFLLC VFCLKVNRNP VSYQQHLLRH QVNQAFHCNR
CRLQFVFLKD KMQHKLDNHR SFRRPVQLEG LPPGSKVTIR TYKKVRPPAT SRLQSPSSLI
QPISIKTEPQ TPLIQTSLGK SRPSLSPPNR PQSRRVQASR TSRRVPERLR CVECGTFVSD
FSAHYPSHVH CLLCPYSSCC SRAYAAHMIH HHVPPSKDKV VALHRVPPPC MFLLQCSTCG
FRPWTADHMA THLRMNPEHY SATCRVRSKA PLWNVTDGEE EEPADDFLTL NPDSSGSAWK
SAKCWERPGR GNTADSCILP FVRALGGGAS GQTRGLPPET VWPCVGDALE RHKRDGLPVD
QRSSGSTGHR LEEVADQSSG EVEKERDDSL NARQLRIALF ALCEGLHQAS RSFSTDTRLI
RLWLKEARKC FTRTEQEQAA NADGSERMVA WVLSMREQQL PITESNLFHK ASTLRKRGTF
SDSFRISYDW AVGFMLQHRL GTQSIFKEAS LARRLPPFLQ VKVESFQQFT KQVIQVKKLP
ESLVAAMDEL CLFVDLRVVQ DKARCSEALE LTGSVPLVTV YLAVLANGTM LPSLVMTNRT
LAQKRVPEFM LLQDGADSLL VEEVLELWTS KVWIPHVSRP AQPQKSMLVL DRHREHLRDS
FLTSISGAGT LPAMVPGGCS FRLQPLEVCL KPVLKFFLLS RWAQLTSGNP KELQESSPQQ
LQANVAQILV DWVTEALTHM NKLPELWRRS FHLADLLPRN HQMGREVDGL TNQKPGEVQS
DLIKTLTETL LGPEALADIS TGGPELEDEE STEEE
//