ID H3GV99_PHYRM Unreviewed; 1019 AA.
AC H3GV99;
DT 18-APR-2012, integrated into UniProtKB/TrEMBL.
DT 18-APR-2012, sequence version 1.
DT 13-SEP-2023, entry version 42.
DE RecName: Full=Retrotransposon gag domain-containing protein {ECO:0008006|Google:ProtNLM};
OS Phytophthora ramorum (Sudden oak death agent).
OC Eukaryota; Sar; Stramenopiles; Oomycota; Peronosporales; Peronosporaceae;
OC Phytophthora.
OX NCBI_TaxID=164328 {ECO:0000313|EnsemblProtists:Phyra81237, ECO:0000313|Proteomes:UP000005238};
RN [1] {ECO:0000313|Proteomes:UP000005238}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Pr102 {ECO:0000313|Proteomes:UP000005238};
RX PubMed=16946064; DOI=10.1126/science.1128796;
RA Tyler B.M., Tripathy S., Zhang X., Dehal P., Jiang R.H., Aerts A.,
RA Arredondo F.D., Baxter L., Bensasson D., Beynon J.L., Chapman J.,
RA Damasceno C.M., Dorrance A.E., Dou D., Dickerman A.W., Dubchak I.L.,
RA Garbelotto M., Gijzen M., Gordon S.G., Govers F., Grunwald N.J., Huang W.,
RA Ivors K.L., Jones R.W., Kamoun S., Krampis K., Lamour K.H., Lee M.K.,
RA McDonald W.H., Medina M., Meijer H.J., Nordberg E.K., Maclean D.J.,
RA Ospina-Giraldo M.D., Morris P.F., Phuntumart V., Putnam N.H., Rash S.,
RA Rose J.K., Sakihama Y., Salamov A.A., Savidor A., Scheuring C.F.,
RA Smith B.M., Sobral B.W., Terry A., Torto-Alalibo T.A., Win J., Xu Z.,
RA Zhang H., Grigoriev I.V., Rokhsar D.S., Boore J.L.;
RT "Phytophthora genome sequences uncover evolutionary origins and mechanisms
RT of pathogenesis.";
RL Science 313:1261-1266(2006).
RN [2] {ECO:0000313|EnsemblProtists:Phyra81237}
RP IDENTIFICATION.
RC STRAIN=Pr102 {ECO:0000313|EnsemblProtists:Phyra81237};
RG EnsemblProtists;
RL Submitted (JUN-2015) to UniProtKB.
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DR EMBL; DS566054; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR AlphaFoldDB; H3GV99; -.
DR EnsemblProtists; Phyra81237; Phyra81237; Phyra81237.
DR VEuPathDB; FungiDB:PSURA_81237; -.
DR eggNOG; KOG0017; Eukaryota.
DR HOGENOM; CLU_000384_41_2_1; -.
DR InParanoid; H3GV99; -.
DR Proteomes; UP000005238; Unassembled WGS sequence.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 3.30.70.270; -; 1.
DR Gene3D; 2.40.70.10; Acid Proteases; 1.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR032567; LDOC1-rel.
DR InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR InterPro; IPR005162; Retrotrans_gag_dom.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR PANTHER; PTHR15503:SF34; CCHC-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR15503; LDOC1 RELATED; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF03732; Retrotrans_gag; 1.
DR Pfam; PF08284; RVP_2; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000005238}.
FT DOMAIN 125..220
FT /note="Retrotransposon gag"
FT /evidence="ECO:0000259|Pfam:PF03732"
FT DOMAIN 926..976
FT /note="Integrase zinc-binding"
FT /evidence="ECO:0000259|Pfam:PF17921"
FT REGION 263..304
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 387..585
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 280..294
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 440..470
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 515..537
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1019 AA; 113127 MW; C18682F1BEC6F90A CRC64;
MSVGSPNTSA THVAREDCPH LSEPEWEALQ RLSTVIGEAA VATMLRTLSP TEQHGVALGF
IVKEQRETAA RTSVSPSATP RVESLKLHVS SYVGREGEPL LRWLVEVDTA ITARRIVDPL
SKVAFAMSCL GGRARSWAYG RRLTDPTCFS TYEEFKEELK LAFEPPQNEF RSRAEFLDLQ
QGKHDVHAYA QRARYMVSNI VTNPIDEATK VVTFMKGLRD GPVKTYLFRE YPNTLEAAIA
LAMQEEFSLR QAKLHVNAPR LMPRPVVRPS GGPEPMDLSS ATAAGSQQRR GSTNGPAGAG
RPAGDAIERV DIGHAAMKIA APSESQSHCK KQDDKPNLVI LKKEFVDELI VLELDDKFDM
VLGMPWLARH DPVIGWMKRT IVRFGSSSSA TESDGPVGAA HAPRGACGPP PETARNAAVS
GHPKRTPTTA RVVGRRCEPN QQGLVQSDSR GSRSVRGDAV VSTGNVDTQL VERHSAVRRR
GKEGASALGA DAASSADGCK RPAPEMLASS RAAGLHDEAV RDQAGLERVR PRVKPAGEYK
EQLSTAGPGQ EETRGAGLHT RSERRKREKL RKSRSGTETL QAVSAGQTQE LETTVETVSV
LTRTSIGLQY KKMRLDNPPT LASELMSLPV TSWKRFAREL HDGRIEQICI LSDVERMTCE
AEELNQLISE GADALSAKSK KERFDEQGWD SLKASPFYKV LREYKDVLPD GIPAELPQDK
GVQHEIDLVP GTKYCVTRQW PLPREQVKAI DDFFESRRNA GQVRESKSPH SAPTFCVKKP
QGGWRIVHAY NKLNDATVPA QTPIPRKDVI IDSMTSSTIF STLDLRDGFY QILTRESDIP
LTAIMRCKRP TPTQLASSLL DVVKAAYAHD ADAKQLVEYF STPSDKSRQK LAKHLRARVH
RYRVHNGLLL YSAVDDNADR IVVPDDHELK LKITYEYHDA PTSGHPGREK TYLLLARDFY
WSHQYKWVRK YVRACELSMS TADHPQTDGQ TERVNRVLVD TMKSYAHSFH QWSDCLPMA
//