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Database: UniProt
Entry: H3GV99_PHYRM
LinkDB: H3GV99_PHYRM
Original site: H3GV99_PHYRM 
ID   H3GV99_PHYRM            Unreviewed;      1019 AA.
AC   H3GV99;
DT   18-APR-2012, integrated into UniProtKB/TrEMBL.
DT   18-APR-2012, sequence version 1.
DT   13-SEP-2023, entry version 42.
DE   RecName: Full=Retrotransposon gag domain-containing protein {ECO:0008006|Google:ProtNLM};
OS   Phytophthora ramorum (Sudden oak death agent).
OC   Eukaryota; Sar; Stramenopiles; Oomycota; Peronosporales; Peronosporaceae;
OC   Phytophthora.
OX   NCBI_TaxID=164328 {ECO:0000313|EnsemblProtists:Phyra81237, ECO:0000313|Proteomes:UP000005238};
RN   [1] {ECO:0000313|Proteomes:UP000005238}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Pr102 {ECO:0000313|Proteomes:UP000005238};
RX   PubMed=16946064; DOI=10.1126/science.1128796;
RA   Tyler B.M., Tripathy S., Zhang X., Dehal P., Jiang R.H., Aerts A.,
RA   Arredondo F.D., Baxter L., Bensasson D., Beynon J.L., Chapman J.,
RA   Damasceno C.M., Dorrance A.E., Dou D., Dickerman A.W., Dubchak I.L.,
RA   Garbelotto M., Gijzen M., Gordon S.G., Govers F., Grunwald N.J., Huang W.,
RA   Ivors K.L., Jones R.W., Kamoun S., Krampis K., Lamour K.H., Lee M.K.,
RA   McDonald W.H., Medina M., Meijer H.J., Nordberg E.K., Maclean D.J.,
RA   Ospina-Giraldo M.D., Morris P.F., Phuntumart V., Putnam N.H., Rash S.,
RA   Rose J.K., Sakihama Y., Salamov A.A., Savidor A., Scheuring C.F.,
RA   Smith B.M., Sobral B.W., Terry A., Torto-Alalibo T.A., Win J., Xu Z.,
RA   Zhang H., Grigoriev I.V., Rokhsar D.S., Boore J.L.;
RT   "Phytophthora genome sequences uncover evolutionary origins and mechanisms
RT   of pathogenesis.";
RL   Science 313:1261-1266(2006).
RN   [2] {ECO:0000313|EnsemblProtists:Phyra81237}
RP   IDENTIFICATION.
RC   STRAIN=Pr102 {ECO:0000313|EnsemblProtists:Phyra81237};
RG   EnsemblProtists;
RL   Submitted (JUN-2015) to UniProtKB.
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DR   EMBL; DS566054; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   AlphaFoldDB; H3GV99; -.
DR   EnsemblProtists; Phyra81237; Phyra81237; Phyra81237.
DR   VEuPathDB; FungiDB:PSURA_81237; -.
DR   eggNOG; KOG0017; Eukaryota.
DR   HOGENOM; CLU_000384_41_2_1; -.
DR   InParanoid; H3GV99; -.
DR   Proteomes; UP000005238; Unassembled WGS sequence.
DR   CDD; cd01647; RT_LTR; 1.
DR   Gene3D; 1.10.340.70; -; 1.
DR   Gene3D; 3.30.70.270; -; 1.
DR   Gene3D; 2.40.70.10; Acid Proteases; 1.
DR   Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR041588; Integrase_H2C2.
DR   InterPro; IPR032567; LDOC1-rel.
DR   InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR   InterPro; IPR005162; Retrotrans_gag_dom.
DR   InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   PANTHER; PTHR15503:SF34; CCHC-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR15503; LDOC1 RELATED; 1.
DR   Pfam; PF17921; Integrase_H2C2; 1.
DR   Pfam; PF03732; Retrotrans_gag; 1.
DR   Pfam; PF08284; RVP_2; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000005238}.
FT   DOMAIN          125..220
FT                   /note="Retrotransposon gag"
FT                   /evidence="ECO:0000259|Pfam:PF03732"
FT   DOMAIN          926..976
FT                   /note="Integrase zinc-binding"
FT                   /evidence="ECO:0000259|Pfam:PF17921"
FT   REGION          263..304
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          387..585
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        280..294
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        440..470
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        515..537
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1019 AA;  113127 MW;  C18682F1BEC6F90A CRC64;
     MSVGSPNTSA THVAREDCPH LSEPEWEALQ RLSTVIGEAA VATMLRTLSP TEQHGVALGF
     IVKEQRETAA RTSVSPSATP RVESLKLHVS SYVGREGEPL LRWLVEVDTA ITARRIVDPL
     SKVAFAMSCL GGRARSWAYG RRLTDPTCFS TYEEFKEELK LAFEPPQNEF RSRAEFLDLQ
     QGKHDVHAYA QRARYMVSNI VTNPIDEATK VVTFMKGLRD GPVKTYLFRE YPNTLEAAIA
     LAMQEEFSLR QAKLHVNAPR LMPRPVVRPS GGPEPMDLSS ATAAGSQQRR GSTNGPAGAG
     RPAGDAIERV DIGHAAMKIA APSESQSHCK KQDDKPNLVI LKKEFVDELI VLELDDKFDM
     VLGMPWLARH DPVIGWMKRT IVRFGSSSSA TESDGPVGAA HAPRGACGPP PETARNAAVS
     GHPKRTPTTA RVVGRRCEPN QQGLVQSDSR GSRSVRGDAV VSTGNVDTQL VERHSAVRRR
     GKEGASALGA DAASSADGCK RPAPEMLASS RAAGLHDEAV RDQAGLERVR PRVKPAGEYK
     EQLSTAGPGQ EETRGAGLHT RSERRKREKL RKSRSGTETL QAVSAGQTQE LETTVETVSV
     LTRTSIGLQY KKMRLDNPPT LASELMSLPV TSWKRFAREL HDGRIEQICI LSDVERMTCE
     AEELNQLISE GADALSAKSK KERFDEQGWD SLKASPFYKV LREYKDVLPD GIPAELPQDK
     GVQHEIDLVP GTKYCVTRQW PLPREQVKAI DDFFESRRNA GQVRESKSPH SAPTFCVKKP
     QGGWRIVHAY NKLNDATVPA QTPIPRKDVI IDSMTSSTIF STLDLRDGFY QILTRESDIP
     LTAIMRCKRP TPTQLASSLL DVVKAAYAHD ADAKQLVEYF STPSDKSRQK LAKHLRARVH
     RYRVHNGLLL YSAVDDNADR IVVPDDHELK LKITYEYHDA PTSGHPGREK TYLLLARDFY
     WSHQYKWVRK YVRACELSMS TADHPQTDGQ TERVNRVLVD TMKSYAHSFH QWSDCLPMA
//
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