ID   H6NGE7_9BACL            Unreviewed;       297 AA.
AC   H6NGE7;
DT   18-APR-2012, integrated into UniProtKB/TrEMBL.
DT   18-APR-2012, sequence version 1.
DT   24-JAN-2024, entry version 52.
DE   SubName: Full=YpcP {ECO:0000313|EMBL:AFC33029.1};
GN   ORFNames=PM3016_6397 {ECO:0000313|EMBL:AFC33029.1};
OS   Paenibacillus mucilaginosus 3016.
OC   Bacteria; Bacillota; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.
OX   NCBI_TaxID=1116391 {ECO:0000313|EMBL:AFC33029.1, ECO:0000313|Proteomes:UP000007523};
RN   [1] {ECO:0000313|EMBL:AFC33029.1, ECO:0000313|Proteomes:UP000007523}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=3016 {ECO:0000313|EMBL:AFC33029.1,
RC   ECO:0000313|Proteomes:UP000007523};
RX   PubMed=22535950; DOI=10.1128/JB.00323-12;
RA   Ma M., Wang Z., Li L., Jiang X., Guan D., Cao F., Chen H., Wang X.,
RA   Shen D., Du B., Li J.;
RT   "Complete Genome Sequence of Paenibacillus mucilaginosus 3016, a Bacterium
RT   Functional as Microbial Fertilizer.";
RL   J. Bacteriol. 194:2777-2778(2012).
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DR   EMBL; CP003235; AFC33029.1; -; Genomic_DNA.
DR   RefSeq; WP_014372156.1; NC_016935.1.
DR   AlphaFoldDB; H6NGE7; -.
DR   STRING; 1116391.PM3016_6397; -.
DR   KEGG; pmq:PM3016_6397; -.
DR   HOGENOM; CLU_004675_1_5_9; -.
DR   Proteomes; UP000007523; Chromosome.
DR   GO; GO:0017108; F:5'-flap endonuclease activity; IEA:InterPro.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0033567; P:DNA replication, Okazaki fragment processing; IEA:InterPro.
DR   CDD; cd09898; H3TH_53EXO; 1.
DR   CDD; cd09859; PIN_53EXO; 1.
DR   Gene3D; 1.10.150.20; 5' to 3' exonuclease, C-terminal subdomain; 1.
DR   Gene3D; 3.40.50.1010; 5'-nuclease; 1.
DR   InterPro; IPR020046; 5-3_exonucl_a-hlix_arch_N.
DR   InterPro; IPR002421; 5-3_exonuclease.
DR   InterPro; IPR036279; 5-3_exonuclease_C_sf.
DR   InterPro; IPR020045; DNA_polI_H3TH.
DR   InterPro; IPR038969; FEN.
DR   InterPro; IPR008918; HhH2.
DR   InterPro; IPR029060; PIN-like_dom_sf.
DR   PANTHER; PTHR42646:SF2; DNA-DIRECTED DNA POLYMERASE; 1.
DR   PANTHER; PTHR42646; FLAP ENDONUCLEASE XNI; 1.
DR   Pfam; PF01367; 5_3_exonuc; 1.
DR   Pfam; PF02739; 5_3_exonuc_N; 1.
DR   SMART; SM00475; 53EXOc; 1.
DR   SMART; SM00279; HhH2; 1.
DR   SUPFAM; SSF47807; 5' to 3' exonuclease, C-terminal subdomain; 1.
DR   SUPFAM; SSF88723; PIN domain-like; 1.
PE   4: Predicted;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   Reference proteome {ECO:0000313|Proteomes:UP000007523}.
FT   DOMAIN          6..267
FT                   /note="5'-3' exonuclease"
FT                   /evidence="ECO:0000259|SMART:SM00475"
SQ   SEQUENCE   297 AA;  32804 MW;  2617C1E76BCA23D5 CRC64;
     MMEEQRKLLI VDGMALLFRA YYANAYGGYI RRTSTGIPTN AVYGFFKYFL DAVQTFKPTH
     VICCWDMGSK TFRTEQYSGY KANRPEAPLE LIPQFDLVKE AVASFGVPNI GFAGYEADDC
     IGTLAGCFGQ EMQVMILTGD HDMLQLVSGQ VSVIIMKKGA SNYAVYTPEA LLLEKGLTPQ
     QFIDLKGLIG DTSDNYPGVK GIGEKTAVKL LLEYGSIEGI LENLENLPKG VRTKISADLE
     MLHLCRDLAR IRCDAPVACS VEDSCWNPDT DTVRSKFVEL EFKGLLGELR WIGAAVS
//