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Database: UniProt
Entry: HOX16_ORYSJ
LinkDB: HOX16_ORYSJ
Original site: HOX16_ORYSJ 
ID   HOX16_ORYSJ             Reviewed;         343 AA.
AC   Q6YWR4; B7F510; Q6Q502; Q6Q7E3;
DT   29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT   05-JUL-2004, sequence version 1.
DT   16-OCT-2019, entry version 116.
DE   RecName: Full=Homeobox-leucine zipper protein HOX16;
DE   AltName: Full=HD-ZIP protein HOX16;
DE   AltName: Full=Homeodomain transcription factor HOX16;
DE   AltName: Full=OsHox16;
GN   Name=HOX16; OrderedLocusNames=Os02g0729700, LOC_Os02g49700;
GN   ORFNames=OsJ_007974, OSJNBa0072H09.24, P0617A09.3;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, GENE FAMILY, AND
RP   NOMENCLATURE.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=17999151; DOI=10.1007/s11103-007-9255-7;
RA   Agalou A., Purwantomo S., Oevernaes E., Johannesson H., Zhu X.,
RA   Estiati A., de Kam R.J., Engstroem P., Slamet-Loedin I.H., Zhu Z.,
RA   Wang M., Xiong L., Meijer A.H., Ouwerkerk P.B.F.;
RT   "A genome-wide survey of HD-Zip genes in rice and analysis of drought-
RT   responsive family members.";
RL   Plant Mol. Biol. 66:87-103(2008).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H.,
RA   McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S.,
RA   Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L.,
RA   Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T.,
RA   Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using
RT   next generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H.,
RA   Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J.,
RA   Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X.,
RA   Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y.,
RA   Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J.,
RA   Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y.,
RA   Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y.,
RA   Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z.,
RA   Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T.,
RA   Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H.,
RA   Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
RA   Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
RA   Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J.,
RA   Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
CC   -!- FUNCTION: Probable transcription factor. {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC   -!- TISSUE SPECIFICITY: Expressed in seedlings, stems, leaf sheaths
CC       and blades and panicles. {ECO:0000269|PubMed:17999151}.
CC   -!- SIMILARITY: Belongs to the HD-ZIP homeobox family. Class I
CC       subfamily. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAS68137.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC       Sequence=AAS68137.1; Type=Frameshift; Evidence={ECO:0000305};
CC       Sequence=AAS83417.1; Type=Frameshift; Evidence={ECO:0000305};
CC       Sequence=AAS83417.1; Type=Miscellaneous discrepancy; Note=Intron retention.; Evidence={ECO:0000305};
DR   EMBL; AY554029; AAS83417.1; ALT_SEQ; mRNA.
DR   EMBL; AY559045; AAS68137.1; ALT_SEQ; mRNA.
DR   EMBL; AP004888; BAD15915.1; -; Genomic_DNA.
DR   EMBL; AP005751; BAD16354.1; -; Genomic_DNA.
DR   EMBL; AP008208; BAF09922.1; -; Genomic_DNA.
DR   EMBL; AP014958; BAS80732.1; -; Genomic_DNA.
DR   EMBL; CM000139; EAZ24491.1; -; Genomic_DNA.
DR   EMBL; AK119592; BAG99707.1; -; mRNA.
DR   RefSeq; XP_015626253.1; XM_015770767.1.
DR   SMR; Q6YWR4; -.
DR   STRING; 4530.OS02T0729700-01; -.
DR   PaxDb; Q6YWR4; -.
DR   EnsemblPlants; Os02t0729700-01; Os02t0729700-01; Os02g0729700.
DR   EnsemblPlants; Os02t0729700-02; Os02t0729700-02; Os02g0729700.
DR   GeneID; 4330610; -.
DR   Gramene; Os02t0729700-01; Os02t0729700-01; Os02g0729700.
DR   Gramene; Os02t0729700-02; Os02t0729700-02; Os02g0729700.
DR   KEGG; osa:4330610; -.
DR   eggNOG; KOG0483; Eukaryota.
DR   eggNOG; ENOG410Z2UE; LUCA.
DR   HOGENOM; HOG000006025; -.
DR   InParanoid; Q6YWR4; -.
DR   KO; K09338; -.
DR   OMA; GARTMIS; -.
DR   OrthoDB; 1066903at2759; -.
DR   Proteomes; UP000059680; Chromosome 2.
DR   Genevisible; Q6YWR4; OS.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR   GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IBA:GO_Central.
DR   CDD; cd00086; homeodomain; 1.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR017970; Homeobox_CS.
DR   InterPro; IPR001356; Homeobox_dom.
DR   InterPro; IPR000047; HTH_motif.
DR   InterPro; IPR003106; Leu_zip_homeo.
DR   Pfam; PF02183; HALZ; 1.
DR   Pfam; PF00046; Homeodomain; 1.
DR   PRINTS; PR00031; HTHREPRESSR.
DR   SMART; SM00389; HOX; 1.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   PROSITE; PS00027; HOMEOBOX_1; 1.
DR   PROSITE; PS50071; HOMEOBOX_2; 1.
PE   2: Evidence at transcript level;
KW   Complete proteome; DNA-binding; Homeobox; Nucleus; Reference proteome;
KW   Transcription; Transcription regulation.
FT   CHAIN         1    343       Homeobox-leucine zipper protein HOX16.
FT                                /FTId=PRO_0000331705.
FT   DNA_BIND     74    133       Homeobox. {ECO:0000255|PROSITE-
FT                                ProRule:PRU00108}.
FT   REGION      132    176       Leucine-zipper.
FT   COMPBIAS     12     52       Gly-rich.
FT   COMPBIAS    317    325       His-rich.
SQ   SEQUENCE   343 AA;  37614 MW;  32DCF732F20A3EFC CRC64;
     MESGRLIFST AGSGAGQMLF LDCGAGGGGV GGGAMFHRGA RPVLGMEEGG RGVKRPFFTT
     PDELLEEEYY DEQLPEKKRR LTPEQVHLLE RSFEEENKLE PERKTELARK LGLQPRQVAV
     WFQNRRARWK TKQLERDFDR LKASFDALRA DHDALLQDNH RLHSQVMSLT EKLQEKETTT
     EGSAGAAVDV PGLPAAADVK VAVPDAEEPA LEEAAAAFEE QQEQQVKAED RLSTGSGGSA
     VVDTDAQLVV GCGRQHLAAV DSSVESYFPG GDEYHDCVMG PMDHAAGGIQ SEEDDGAGSD
     EGCSYYADDA GVLFADHGHH HHHQHADDDE EDGQQISCWW MWN
//
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