ID I0YWE9_COCSC Unreviewed; 600 AA.
AC I0YWE9;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 48.
DE SubName: Full=WD40 repeat-like protein {ECO:0000313|EMBL:EIE22718.1};
GN ORFNames=COCSUDRAFT_47664 {ECO:0000313|EMBL:EIE22718.1};
OS Coccomyxa subellipsoidea (strain C-169) (Green microalga).
OC Eukaryota; Viridiplantae; Chlorophyta; core chlorophytes; Trebouxiophyceae;
OC Trebouxiophyceae incertae sedis; Elliptochloris clade; Coccomyxa;
OC Coccomyxa subellipsoidea.
OX NCBI_TaxID=574566 {ECO:0000313|EMBL:EIE22718.1, ECO:0000313|Proteomes:UP000007264};
RN [1] {ECO:0000313|EMBL:EIE22718.1, ECO:0000313|Proteomes:UP000007264}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=C-169 {ECO:0000313|EMBL:EIE22718.1,
RC ECO:0000313|Proteomes:UP000007264};
RX PubMed=22630137; DOI=10.1186/gb-2012-13-5-r39;
RA Blanc G., Agarkova I., Grimwood J., Kuo A., Brueggeman A., Dunigan D.,
RA Gurnon J., Ladunga I., Lindquist E., Lucas S., Pangilinan J., Proschold T.,
RA Salamov A., Schmutz J., Weeks D., Yamada T., Claverie J.M., Grigoriev I.,
RA Van Etten J., Lomsadze A., Borodovsky M.;
RT "The genome of the polar eukaryotic microalga coccomyxa subellipsoidea
RT reveals traits of cold adaptation.";
RL Genome Biol. 13:R39-R39(2012).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EIE22718.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AGSI01000009; EIE22718.1; -; Genomic_DNA.
DR RefSeq; XP_005647262.1; XM_005647205.1.
DR AlphaFoldDB; I0YWE9; -.
DR STRING; 574566.I0YWE9; -.
DR GeneID; 17040705; -.
DR KEGG; csl:COCSUDRAFT_47664; -.
DR eggNOG; KOG0288; Eukaryota.
DR OrthoDB; 458014at2759; -.
DR Proteomes; UP000007264; Unassembled WGS sequence.
DR GO; GO:0000045; P:autophagosome assembly; IEA:InterPro.
DR CDD; cd00200; WD40; 1.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 2.
DR InterPro; IPR045160; ATG16.
DR InterPro; IPR013923; Autophagy-rel_prot_16_dom.
DR InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR InterPro; IPR001680; WD40_rpt.
DR PANTHER; PTHR19878; AUTOPHAGY PROTEIN 16-LIKE; 1.
DR PANTHER; PTHR19878:SF8; AUTOPHAGY-RELATED 16, ISOFORM F; 1.
DR Pfam; PF08614; ATG16; 1.
DR Pfam; PF00400; WD40; 4.
DR PRINTS; PR00320; GPROTEINBRPT.
DR SMART; SM00320; WD40; 7.
DR SUPFAM; SSF50978; WD40 repeat-like; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 3.
DR PROSITE; PS50082; WD_REPEATS_2; 4.
DR PROSITE; PS50294; WD_REPEATS_REGION; 3.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000007264};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW ProRule:PRU00221}.
FT DOMAIN 18..210
FT /note="Autophagy-related protein 16"
FT /evidence="ECO:0000259|Pfam:PF08614"
FT REPEAT 282..323
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 324..365
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 366..408
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 413..449
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REGION 573..600
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 38..113
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 142..229
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 585..600
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 600 AA; 65182 MW; FD8E9442F1464069 CRC64;
MPFAMEVDIS PTIVQNTVLQ FQQRNAFTSG FVDVVADYQN LLRRCKESKI RNTQLEKEAL
ELRAENATLQ QAVEHSAHAA VSNEKVAVAE SRAKELQEEL TGVYKEKSRL AEELVAASRQ
LQIVRDSNEA QARELIDLAA KGRDMRARIK ELSDALEKEQ AATSLATAEL QSRLEEKEAA
EKRAAKLENE QAELSKRLVD LKMSEIERMN EVNRMCEEMM TNARNMERAA AASSASSSQV
GRFHSLPAGS LTGMVNGIMA KTKGVMHGAI ESLVPDAPLR SVPAHEGGCY TLAFDRSGQR
MASGGADKVV RLWDACSGHQ TGTLLGMTES VTEVAFTCDQ KHLLASGADK AVRMWDLASG
RVRHTLTGHS QKVSSVDCSP LEPNRAVTAG TDRCIKVWDL GRGYCTSTLI CHSSVNSVRL
TMDGFAVVSG HFDGALRFWD LRSGKLANEV AGLHTQQITS VSIGLRTGSV LTCGKDNVVK
VTDARSFQVQ PSMAAPGFAV GGVWSKACLG PDERHCAAGS STGSVFVWGT EKGNLVKTLR
EQGSAQIVQA ACWSPQGTPL VSANKEGLIT FWQPTPEDSS HHDHSHQRGH HHLHGSRHTH
//
