ID I0Z0N5_COCSC Unreviewed; 976 AA.
AC I0Z0N5;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 52.
DE SubName: Full=p-loop containing nucleoside triphosphate hydrolase protein {ECO:0000313|EMBL:EIE24204.1};
GN ORFNames=COCSUDRAFT_65794 {ECO:0000313|EMBL:EIE24204.1};
OS Coccomyxa subellipsoidea (strain C-169) (Green microalga).
OC Eukaryota; Viridiplantae; Chlorophyta; core chlorophytes; Trebouxiophyceae;
OC Trebouxiophyceae incertae sedis; Elliptochloris clade; Coccomyxa;
OC Coccomyxa subellipsoidea.
OX NCBI_TaxID=574566 {ECO:0000313|EMBL:EIE24204.1, ECO:0000313|Proteomes:UP000007264};
RN [1] {ECO:0000313|EMBL:EIE24204.1, ECO:0000313|Proteomes:UP000007264}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=C-169 {ECO:0000313|EMBL:EIE24204.1,
RC ECO:0000313|Proteomes:UP000007264};
RX PubMed=22630137; DOI=10.1186/gb-2012-13-5-r39;
RA Blanc G., Agarkova I., Grimwood J., Kuo A., Brueggeman A., Dunigan D.,
RA Gurnon J., Ladunga I., Lindquist E., Lucas S., Pangilinan J., Proschold T.,
RA Salamov A., Schmutz J., Weeks D., Yamada T., Claverie J.M., Grigoriev I.,
RA Van Etten J., Lomsadze A., Borodovsky M.;
RT "The genome of the polar eukaryotic microalga coccomyxa subellipsoidea
RT reveals traits of cold adaptation.";
RL Genome Biol. 13:R39-R39(2012).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EIE24204.1}.
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DR EMBL; AGSI01000006; EIE24204.1; -; Genomic_DNA.
DR RefSeq; XP_005648748.1; XM_005648691.1.
DR AlphaFoldDB; I0Z0N5; -.
DR STRING; 574566.I0Z0N5; -.
DR GeneID; 17042202; -.
DR KEGG; csl:COCSUDRAFT_65794; -.
DR eggNOG; KOG0468; Eukaryota.
DR OrthoDB; 166721at2759; -.
DR Proteomes; UP000007264; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-KW.
DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW.
DR GO; GO:0003924; F:GTPase activity; IEA:InterPro.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR GO; GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
DR CDD; cd04098; eEF2_C_snRNP; 1.
DR CDD; cd04090; EF2_II_snRNP; 1.
DR CDD; cd01683; EF2_IV_snRNP; 1.
DR CDD; cd16264; snRNP_III; 1.
DR CDD; cd04167; Snu114p; 1.
DR Gene3D; 3.30.230.10; -; 1.
DR Gene3D; 3.30.70.240; -; 1.
DR Gene3D; 3.30.70.870; Elongation Factor G (Translational Gtpase), domain 3; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 2.40.30.10; Translation factors; 1.
DR Gene3D; 3.90.1430.10; Yeast translation eEF2 (G' domain); 1.
DR InterPro; IPR035647; EFG_III/V.
DR InterPro; IPR000640; EFG_V-like.
DR InterPro; IPR004161; EFTu-like_2.
DR InterPro; IPR031950; EFTUD2_N.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR020568; Ribosomal_Su5_D2-typ_SF.
DR InterPro; IPR014721; Ribsml_uS5_D2-typ_fold_subgr.
DR InterPro; IPR005225; Small_GTP-bd_dom.
DR InterPro; IPR044121; Snu114_GTP-bd.
DR InterPro; IPR000795; T_Tr_GTP-bd_dom.
DR InterPro; IPR009000; Transl_B-barrel_sf.
DR InterPro; IPR005517; Transl_elong_EFG/EF2_IV.
DR InterPro; IPR035655; U5-116kDa_C.
DR NCBIfam; TIGR00231; small_GTP; 1.
DR PANTHER; PTHR42908:SF6; 116 KDA U5 SMALL NUCLEAR RIBONUCLEOPROTEIN COMPONENT; 1.
DR PANTHER; PTHR42908; TRANSLATION ELONGATION FACTOR-RELATED; 1.
DR Pfam; PF00679; EFG_C; 1.
DR Pfam; PF03764; EFG_IV; 1.
DR Pfam; PF16004; EFTUD2; 1.
DR Pfam; PF00009; GTP_EFTU; 1.
DR Pfam; PF03144; GTP_EFTU_D2; 1.
DR PRINTS; PR00315; ELONGATNFCT.
DR SMART; SM00838; EFG_C; 1.
DR SMART; SM00889; EFG_IV; 1.
DR SUPFAM; SSF54980; EF-G C-terminal domain-like; 2.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF54211; Ribosomal protein S5 domain 2-like; 1.
DR SUPFAM; SSF50447; Translation proteins; 1.
DR PROSITE; PS51722; G_TR_2; 1.
PE 4: Predicted;
KW GTP-binding {ECO:0000256|ARBA:ARBA00023134};
KW Hydrolase {ECO:0000313|EMBL:EIE24204.1};
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000007264}.
FT DOMAIN 138..421
FT /note="Tr-type G"
FT /evidence="ECO:0000259|PROSITE:PS51722"
FT REGION 1..31
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 976 AA; 109201 MW; 383594886546BA8B CRC64;
MDDSLYDEFG NYIGPELSGS EEEDEEEVEE DEDMAEAEAL ANARMDMIQN AGAQNFPDDD
EEPIENAVVL HEDKKYYPSA EEVYGAETET LVMEEDAQPL EVPIIAPVKQ KKLEVLERAP
LPTYYSNEFL AGLMTNPELV RNVAIVGHLH HGKTLVMDMF VEQTHEVRHE WRDNERPMRF
TDTRLDEQER AISLKMVPMS LVMEGSSGKS YLLNLIDTPG HINFNDEVSA ALRLADGMLL
VVDAAEGVMV VTEKAVKQAI MEGLPICLLI SKVDRLITEL KLPPADAYHK LRHTIEEVNA
LITTYSGGNE ELLVSPTRGN VGFSSAQSGW SFTLQSFSKL YCEVYGVHMD AAEFARRLWG
DVYYHSDTRT FRKKAPERGG ERSFVQFILE PLYKIYAQVL GEHDSGVKEM LGTFGVQLKP
SAFKKDVKPL LKEACTRIFG TATGLVDMMV KHVERTYTGP QTGDIVDHMK ACNPRGPLVI
HIAKLFPKTD VSAFDALGRI LSGTVKPGDR VRVLGEAYTP EDEEDSAVAE VTKVWVYQAR
YRIPLTKALA GNWVLLEGLD ATITKTATIV PEYLDEDVHI FRPLQFQTQA VVKIAVEPLN
PSELPKMVEG LRKINKSYPL AVTKVEESGE HAILGTGEIY LDSLMKDLRE LYAEVEVKVA
DPVVAFCETV VETSSLRCFA ETPNKRNKLT MIAEPLEKGL AEDIESGAVD ISWPRRRLGE
FFTTRYDWDV LAARSVWAFG PQRAGPNILM DDTLPTDVDK SLLSAVRDSV VQGFQWGTRE
GPLCDEPIRN VKFKILGAEI APEPLARGGG QIIPTARRVC YSAFLMATPR LVEPVYYVEI
QTPADCITAI YAVLGKRRGH VTADVPKPGT PIFIVKAFLP VIESFGFETD LRYHTQGQAF
CLSVFDHWQI VPGDPLDRSV ELRPLEPAPV NALARELMVK TRRRKGMSED VSIHKFFDDP
MLIELARQDA DLEKFV
//
