ID   I0Z9L0_COCSC            Unreviewed;      1214 AA.
AC   I0Z9L0;
DT   13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT   13-JUN-2012, sequence version 1.
DT   22-FEB-2023, entry version 37.
DE   SubName: Full=ARM repeat-containing protein {ECO:0000313|EMBL:EIE27329.1};
GN   ORFNames=COCSUDRAFT_64175 {ECO:0000313|EMBL:EIE27329.1};
OS   Coccomyxa subellipsoidea (strain C-169) (Green microalga).
OC   Eukaryota; Viridiplantae; Chlorophyta; core chlorophytes; Trebouxiophyceae;
OC   Trebouxiophyceae incertae sedis; Elliptochloris clade; Coccomyxa;
OC   Coccomyxa subellipsoidea.
OX   NCBI_TaxID=574566 {ECO:0000313|EMBL:EIE27329.1, ECO:0000313|Proteomes:UP000007264};
RN   [1] {ECO:0000313|EMBL:EIE27329.1, ECO:0000313|Proteomes:UP000007264}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=C-169 {ECO:0000313|EMBL:EIE27329.1,
RC   ECO:0000313|Proteomes:UP000007264};
RX   PubMed=22630137; DOI=10.1186/gb-2012-13-5-r39;
RA   Blanc G., Agarkova I., Grimwood J., Kuo A., Brueggeman A., Dunigan D.,
RA   Gurnon J., Ladunga I., Lindquist E., Lucas S., Pangilinan J., Proschold T.,
RA   Salamov A., Schmutz J., Weeks D., Yamada T., Claverie J.M., Grigoriev I.,
RA   Van Etten J., Lomsadze A., Borodovsky M.;
RT   "The genome of the polar eukaryotic microalga coccomyxa subellipsoidea
RT   reveals traits of cold adaptation.";
RL   Genome Biol. 13:R39-R39(2012).
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:EIE27329.1}.
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DR   EMBL; AGSI01000001; EIE27329.1; -; Genomic_DNA.
DR   RefSeq; XP_005651873.1; XM_005651816.1.
DR   AlphaFoldDB; I0Z9L0; -.
DR   STRING; 574566.I0Z9L0; -.
DR   GeneID; 17045344; -.
DR   KEGG; csl:COCSUDRAFT_64175; -.
DR   eggNOG; KOG2051; Eukaryota.
DR   OrthoDB; 276824at2759; -.
DR   Proteomes; UP000007264; Unassembled WGS sequence.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:InterPro.
DR   Gene3D; 1.25.40.180; -; 3.
DR   InterPro; IPR016024; ARM-type_fold.
DR   InterPro; IPR003890; MIF4G-like_typ-3.
DR   InterPro; IPR039762; Nmd2/UPF2.
DR   InterPro; IPR007193; Upf2/Nmd2_C.
DR   PANTHER; PTHR12839; NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2; 1.
DR   PANTHER; PTHR12839:SF7; REGULATOR OF NONSENSE TRANSCRIPTS 2; 1.
DR   Pfam; PF02854; MIF4G; 2.
DR   Pfam; PF04050; Upf2; 1.
DR   SMART; SM00543; MIF4G; 2.
DR   SUPFAM; SSF48371; ARM repeat; 2.
PE   4: Predicted;
KW   Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW   Reference proteome {ECO:0000313|Proteomes:UP000007264}.
FT   DOMAIN          554..745
FT                   /note="MIF4G"
FT                   /evidence="ECO:0000259|SMART:SM00543"
FT   DOMAIN          760..963
FT                   /note="MIF4G"
FT                   /evidence="ECO:0000259|SMART:SM00543"
FT   REGION          311..336
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          496..548
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          988..1042
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1076..1098
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1163..1214
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1005..1042
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1082..1098
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1214 AA;  132656 MW;  962A62F7AEA28E7F CRC64;
     MACAPASATN SNLLLPRDGV PVTDADQAKE RHLSGSTFWD AWPFPAMFLF TMLAIYSLRW
     DKQERQGSSH HCPPEVAGGL TDVASTVAVR LTAVLADTAM LAVSDRAATS SFHEEVQRLQ
     ESRQMRDSNL NALPLTDADL RKLDASVKRN TALIKRLRSV SEESKAGLLE EISRTNQSKY
     VSEAVTAISE ANVKTKDIAA AVEVISLLHQ RYAEFSGELI AKLYDVFIPA TRDAEDERSS
     LARRRSALRL LCELLLVGVH HNTLPLVAVA RRLAAAEFER DPAGAQAALS LLAGFAKWHR
     VEFLGFPRRP PAELPPEALP QADGAEEPQE MREARSQQAV EQAAYEEQAA SAFMPSKDSQ
     ELFMAAMTRA FDCGCEALLR DHAALARTEH DNERVLNNRG ELPEEMAAAY EKQHKSFEAL
     QRSLASLAES LERDMPALPE TTTRFTGEGS VSVITRQEGE DFSTGPFEDE ETRALYESLP
     DIRALVPALL LGTAEAQQTA EEDAAEQPME VEASGADRAA DAGAADTQKE AAQETTPAES
     KGAEAAARPG RAEVEAVVAC LPTLCSREEC DELAVNFCYV NSKGARKRMA RALFDAPEGA
     PHLLGFYSRV AASLAQVFPD MAAALLRSLE EEFALLQARK DPTQRSLEAR LRNARYLAEL
     TKFRLAPFGT FFSLLKQLLD DFAGHNVDAA AALVETAGRF LYRLPETQTR IANMLDVMMK
     LKNSRNLDAR QSMLLDNAYY AVRPPERVGA RRKRRPPVHE YARHLIHDRL ATEQVKPVFR
     KLRRLAWAEN EAYVVRCMLA AAKGRFDDLP LVASLAAGLS RYHPSLAIAL PDALLEEANT
     NQWWLQVRVG LEAGEEGTSY QKRVGHMRLL GELYNYRIID SRTVFDTLYT LLAFGHDSPE
     TAALLDPPTS YFRTCGGYFH KGSAARKLDR FLAYFQRYIL AKPPLPLDID FDVQDLFEHV
     RPKMKRHTSF EEAFEAVVTI EAEDAAAAAA GVQSDNSDSD DGGSRPGLGS DDEGGKEAEA
     AATDRDDMSE SGVSTADEDE EVRVLNAGQL REEELDPDFE RELAALVSEH QGPGAAFSAA
     QPQAGETGSS TATVSNRVDP GGTVAFKVML RRGGKDDKTR SVQVPLSAAM AVQLRSKAAS
     EETERAEIKR LVLRANQNLD LAGLASTPRG GAGRPPAVAA KTGGYYSRGG GAAGGAGRGR
     GRRYSAQHGR DTQT
//