ID I0ZAR9_COCSC Unreviewed; 1967 AA.
AC I0ZAR9;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 57.
DE RecName: Full=PHD-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=COCSUDRAFT_39323 {ECO:0000313|EMBL:EIE27738.1};
OS Coccomyxa subellipsoidea (strain C-169) (Green microalga).
OC Eukaryota; Viridiplantae; Chlorophyta; core chlorophytes; Trebouxiophyceae;
OC Trebouxiophyceae incertae sedis; Elliptochloris clade; Coccomyxa;
OC Coccomyxa subellipsoidea.
OX NCBI_TaxID=574566 {ECO:0000313|EMBL:EIE27738.1, ECO:0000313|Proteomes:UP000007264};
RN [1] {ECO:0000313|EMBL:EIE27738.1, ECO:0000313|Proteomes:UP000007264}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=C-169 {ECO:0000313|EMBL:EIE27738.1,
RC ECO:0000313|Proteomes:UP000007264};
RX PubMed=22630137; DOI=10.1186/gb-2012-13-5-r39;
RA Blanc G., Agarkova I., Grimwood J., Kuo A., Brueggeman A., Dunigan D.,
RA Gurnon J., Ladunga I., Lindquist E., Lucas S., Pangilinan J., Proschold T.,
RA Salamov A., Schmutz J., Weeks D., Yamada T., Claverie J.M., Grigoriev I.,
RA Van Etten J., Lomsadze A., Borodovsky M.;
RT "The genome of the polar eukaryotic microalga coccomyxa subellipsoidea
RT reveals traits of cold adaptation.";
RL Genome Biol. 13:R39-R39(2012).
CC -!- SIMILARITY: Belongs to the SBNO family.
CC {ECO:0000256|ARBA:ARBA00006992}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EIE27738.1}.
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DR EMBL; AGSI01000001; EIE27738.1; -; Genomic_DNA.
DR RefSeq; XP_005652282.1; XM_005652225.1.
DR GeneID; 17045753; -.
DR KEGG; csl:COCSUDRAFT_39323; -.
DR eggNOG; KOG0825; Eukaryota.
DR eggNOG; KOG1513; Eukaryota.
DR OrthoDB; 103172at2759; -.
DR Proteomes; UP000007264; Unassembled WGS sequence.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR GO; GO:0048583; P:regulation of response to stimulus; IEA:UniProt.
DR CDD; cd15519; PHD1_Lid2p_like; 1.
DR Gene3D; 2.30.30.1150; -; 1.
DR Gene3D; 2.30.180.10; FAS1 domain; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR036378; FAS1_dom_sf.
DR InterPro; IPR000782; FAS1_domain.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR026937; SBNO_Helicase_C_dom.
DR InterPro; IPR026741; SNO.
DR InterPro; IPR039187; SNO_AAA.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR PANTHER; PTHR12706:SF30; PROTEIN STRAWBERRY NOTCH; 1.
DR PANTHER; PTHR12706; STRAWBERRY NOTCH-RELATED; 1.
DR Pfam; PF13872; AAA_34; 1.
DR Pfam; PF02469; Fasciclin; 1.
DR Pfam; PF13871; Helicase_C_4; 1.
DR Pfam; PF00628; PHD; 1.
DR SMART; SM00554; FAS1; 1.
DR SMART; SM00249; PHD; 1.
DR SUPFAM; SSF82153; FAS1 domain; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR PROSITE; PS50213; FAS1; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
PE 3: Inferred from homology;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000007264};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00146}.
FT DOMAIN 793..843
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT DOMAIN 1741..1901
FT /note="FAS1"
FT /evidence="ECO:0000259|PROSITE:PS50213"
FT REGION 546..585
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 681..786
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 847..1026
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1046..1118
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 696..738
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 769..786
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 860..889
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 953..980
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1077..1096
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1097..1118
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1967 AA; 213772 MW; EC51157DA8F83D7A CRC64;
MPPELRTAMQ AAQLQALRLQ QAEAKKKRDQ ELKELREHVH DEVVNAAAGY DNEDDSAEVY
ATYRPTKLKE GHAHPDIIVE SALLACVSPP DITYKHHLQD IVEEGLISDA QLEAVVYANM
RFQNTLSGPK KERAGFFLGD GAGVGKGRTI AATMKEHFVA GQGSRALWVS VSKDLCFDAQ
RDLDDVKCDV RVFPQGNTPL PKGSLAKHYS EGVLFVTYSL LVSNTKQMAE PKLPGTGEAA
AAEPQDWRIP KGTRLQQIVD WLDGGEGDPL IVFDECHKAK NLIAVKGDPT QTGKAVLALQ
QVLPRAKVLY SSATGASEPH NLAYMVRLGT FGFPDMMGMI ESLNKSGLGA LELFSMGLKA
TGTYISRSLS YAGAEFSIVR VDVDPVFKVM YDRACMFWHF LYNIFLEYRL MSGRQWMNFY
ATEMRFFRQM LMAAKVHKTA QVAQEAIRDG MSVVIGLQST GEANTNATRE ESGDVLDDFV
SAPKVIMQQF LEKAFPVYSE SSSGADLRKL QYQVYEMVKL VKEYRPAAEE AVHNLKMAAK
TAIMAQQAAP GPSAPQAAPQ PRAARAASSA QPSRNAAPDE ASDDDDVVVA AELDIDAVLA
RRRAAAIANG DMVDLAADVD EGAMAAAAAA MAADIESAER ERLERFKEAK LQRFRERIAE
AKEEVTEAKE ALEKVRQKLA AAADGAPAAA EPRAGGQKPL RKRPAEAASK AASEDSDDLQ
DSFAKGSSAK RRKSQVILED DDDEEESLHT EERSKDAEES EEAAAEMEAE PEDSFKTARS
GKSLEEELAE LDEVGCEECG KNDRGEEMLL CDGCDHGYHT DCLDPPLKEI PEGDWFCPSC
AASQKPAAAA KAGAASKQQQ EIEDSEEDNA PVESQSRRGR RRTLVTLDSS SDEDDFADAA
VTVRAPTIQI KAEPGSGKPA KRGGAGSSGE AGHAAFTVRR NAPRGGRPAA ATTDSDAEQS
GSNASRSGSR QRTGRAPSPA PAQRTSRLGR SAAALLTDDD SDFEEAPVLR SRRGGERCPA
GGGLKLGELA AKRRLELAEQ ELAEAAAALA RAQEDPAERR RKGAASPQGA ASRTRAGRAG
QKSSGSVMVI DSDSASEDSD FSADEDSSDD GDDSDDSDVV LCAEYRPHVQ ARELGEKWEE
EAKESKAAQG VGHKELKLIL ATLLRLWDAF ELPANPLDQL TELLGGTDKV AEMTGRKGLL
VRAGDGKVEY QARRAEESQK NVNMAEKNSF MQGEKLIAII SEAASTGISL QADKRVANQR
RRCHLTLELP WSADKAIQQF GRSHRSNQAS APIYRIIVTQ CGGEYRFAAS AAKRLQSLGA
LLRGDRRALG AGQDLKSFDV DNRWGLEALK RIMDDCTGQT APIAGVEVPR LLPEMRVDPT
AEQTEEEFFA YMRAAIKPVG MLQEVSSRHA AYGLVPSPSV VKSVPTFLNR VLAMGMDDQE
LIFRYFSNTM DALIASAKST GRYEHGPINL QASGVEVARR QIVHCEPGTG ATTYHAVLNV
NRGLSWDDAV AYRDAALAQA VDAGEELDRN VGFYTDRFVK DHGKTGHKFV ILGTRARQDM
MVKRYRVQRP NTIHQPLWTA HQLTQDNYVR VSDKEAEKHW RFWYDYSEKH CTHGNTCAKR
KRNEECTYGM RIQKTELITG AVLPIWKVLF DVISSSHHGR SAHGDKPKPR IVRTQLTSSG
EPIVGLSIHR DDAERLCHRS RSKVTAEVPN VSVEDVKAIM GEALGQKAKN TPKQLQAVAD
YTDISEVLGA PRKSLRYGSS LSLDEGIKFT YDKGARILKE VNSPYVTATF FAPTNDAFAA
LLHALGSTPQ QLLADPSIVP ILLYHMIPGE YSLIADLHDG QSLVTSVNTN LTVGSAAAPA
MAAPAPNMTV VTIRSAQSVA DIVKYNMTAC MAVVHEVDQV FVPDFQSVQT VGNRVIYGLG
DGSGAQNVVA NFTLILPGGD MNTSDISDPV YQVTDAGLMF SVTPAPV
//
