GenomeNet

Database: UniProt
Entry: I1CCB3_RHIO9
LinkDB: I1CCB3_RHIO9
Original site: I1CCB3_RHIO9 
ID   I1CCB3_RHIO9            Unreviewed;      1568 AA.
AC   I1CCB3;
DT   13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT   13-JUN-2012, sequence version 1.
DT   24-JAN-2024, entry version 47.
DE   RecName: Full=Reverse transcriptase {ECO:0008006|Google:ProtNLM};
GN   ORFNames=RO3G_10804 {ECO:0000313|EMBL:EIE86093.1};
OS   Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL
OS   43880) (Mucormycosis agent) (Rhizopus arrhizus var. delemar).
OC   Eukaryota; Fungi; Fungi incertae sedis; Mucoromycota; Mucoromycotina;
OC   Mucoromycetes; Mucorales; Mucorineae; Rhizopodaceae; Rhizopus.
OX   NCBI_TaxID=246409 {ECO:0000313|EMBL:EIE86093.1, ECO:0000313|Proteomes:UP000009138};
RN   [1] {ECO:0000313|EMBL:EIE86093.1, ECO:0000313|Proteomes:UP000009138}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880
RC   {ECO:0000313|Proteomes:UP000009138};
RX   PubMed=19578406; DOI=10.1371/journal.pgen.1000549;
RA   Ma L.-J., Ibrahim A.S., Skory C., Grabherr M.G., Burger G., Butler M.,
RA   Elias M., Idnurm A., Lang B.F., Sone T., Abe A., Calvo S.E.,
RA   Corrochano L.M., Engels R., Fu J., Hansberg W., Kim J.-M., Kodira C.D.,
RA   Koehrsen M.J., Liu B., Miranda-Saavedra D., O'Leary S.,
RA   Ortiz-Castellanos L., Poulter R., Rodriguez-Romero J., Ruiz-Herrera J.,
RA   Shen Y.-Q., Zeng Q., Galagan J., Birren B.W., Cuomo C.A., Wickes B.L.;
RT   "Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a
RT   whole-genome duplication.";
RL   PLoS Genet. 5:E1000549-E1000549(2009).
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; CH476739; EIE86093.1; -; Genomic_DNA.
DR   STRING; 246409.I1CCB3; -.
DR   VEuPathDB; FungiDB:RO3G_10804; -.
DR   eggNOG; KOG0017; Eukaryota.
DR   InParanoid; I1CCB3; -.
DR   OrthoDB; 1367639at2759; -.
DR   Proteomes; UP000009138; Unassembled WGS sequence.
DR   GO; GO:0005634; C:nucleus; IEA:UniProt.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR   CDD; cd00024; CD_CSD; 1.
DR   CDD; cd09274; RNase_HI_RT_Ty3; 1.
DR   CDD; cd01647; RT_LTR; 1.
DR   Gene3D; 1.10.340.70; -; 1.
DR   Gene3D; 2.40.50.40; -; 1.
DR   Gene3D; 3.30.70.270; -; 2.
DR   Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR   Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR   InterPro; IPR016197; Chromo-like_dom_sf.
DR   InterPro; IPR000953; Chromo/chromo_shadow_dom.
DR   InterPro; IPR023780; Chromo_domain.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR001584; Integrase_cat-core.
DR   InterPro; IPR041588; Integrase_H2C2.
DR   InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR036397; RNaseH_sf.
DR   InterPro; IPR000477; RT_dom.
DR   InterPro; IPR041577; RT_RNaseH_2.
DR   PANTHER; PTHR33064; POL PROTEIN; 1.
DR   PANTHER; PTHR33064:SF35; RIBONUCLEASE H; 1.
DR   Pfam; PF00385; Chromo; 1.
DR   Pfam; PF17921; Integrase_H2C2; 1.
DR   Pfam; PF17919; RT_RNaseH_2; 1.
DR   Pfam; PF00665; rve; 1.
DR   Pfam; PF00078; RVT_1; 1.
DR   SMART; SM00298; CHROMO; 1.
DR   SUPFAM; SSF54160; Chromo domain-like; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR   PROSITE; PS50013; CHROMO_2; 1.
DR   PROSITE; PS50994; INTEGRASE; 1.
DR   PROSITE; PS50878; RT_POL; 1.
PE   4: Predicted;
KW   Endonuclease {ECO:0000256|ARBA:ARBA00022759};
KW   Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW   Nuclease {ECO:0000256|ARBA:ARBA00022722};
KW   Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW   Reference proteome {ECO:0000313|Proteomes:UP000009138};
KW   RNA-binding {ECO:0000256|ARBA:ARBA00022884};
KW   RNA-directed DNA polymerase {ECO:0000256|ARBA:ARBA00022918};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679};
KW   Transposable element {ECO:0000256|ARBA:ARBA00022464}.
FT   DOMAIN          681..864
FT                   /note="Reverse transcriptase"
FT                   /evidence="ECO:0000259|PROSITE:PS50878"
FT   DOMAIN          1188..1346
FT                   /note="Integrase catalytic"
FT                   /evidence="ECO:0000259|PROSITE:PS50994"
FT   DOMAIN          1482..1540
FT                   /note="Chromo"
FT                   /evidence="ECO:0000259|PROSITE:PS50013"
FT   REGION          1539..1568
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1550..1568
FT                   /note="Basic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1568 AA;  176952 MW;  8B1156DAC6D023DB CRC64;
     MVKEDQTPSP FTHGETDTFE TNMEEIPKAI EDTEMTNAEE TSSPMATSHV ASDDKPVDAV
     MGLRVTLENL RQQIAHAVIS GAPQEHLKGL QERAVTIKNC IMFLDEAQAF CVSPSTPTGE
     AVLGPGNHLN TSYPRSAHVI PPDLPIWQWQ GNVWRKEADV HDSVEDLLDT FALIVESNGL
     SIDSSWSRLV PIKMNRDQRS WFNEVLKGRN LVWSEVRSII VKTYAAQDVA QELEYMDQLL
     SLKMVPAESI EAFTDRFQRI RRAAKWDDDI RTASIYKRAL PAFLRQEVSR SLLNLGRDQQ
     DSVAKVAAKA RVVLSSNLCS EGSPSPRQDS VPVKSLSMSL ASNGTEASKY NPRNSHLLSN
     LQGITKKSSS PGNVKNKFHC AIHGLANHPT DKCNKYKNLL SQSSSSVSPS PTTTNPPMSF
     VSVAKKCFRC SGNVPWSREH AAICPRDKPY HGPSKAIRSA RLVTSSSNGS KLNLTITPQA
     RPQQASSKMS SGDSNLMDVD DEGYPVNYDF DRNVSGSVIL ATSDNVSKRF GTTKFPLSVI
     YGDNDNNLIH TSHSFEVLPL SLDTEVVIGL DLMHKLNILV TNLAIRHPNL APVIDKEITD
     DTPEPNKAPY GTREQQVHFH NAIKPFVDQN ALIPKNSFCT VPESVIRLDT VKGKTAYRAP
     YRTPFKLLPI MRECIDTWLK DEVIERASPN SDWNSPLTLA PKKDLLGNLT GHRPCLDPRL
     LNSILVSNDR HPIPKIEEIF DQLQGSTIFT TLDLRQAFHR FQIYEPDRVK TTFTFEGQQY
     QFRGCPFGLK HIASRYQRVI NIVLRDLPYA QAFVDDIIIF SKSYEEHITH VQNIIQRLTK
     VNLILNPDKC HFAQSTVYLL GFCVDAKGSR LDPRKVTNAL TWPRPSSGKE IQRFLGLVNY
     FRKYLPNISE VTAPLDKLRF EGKLDKLWTS EQESAFEKIK ALLSSAPLLH HPDLEQPFYV
     ATDASNYSIG AVLYQVIKNE TRYIGFMARS LSSSEKNYST TKRELLAVIF ALKKFHPFLW
     GNPFTLYTDH KALTYLHTQP VANAMMINWL DTILDYNFKI IHRPGIQNIL PDALSRLFEP
     EKTLEGDNKT IKTIVTSQII NSNGSILTSR MMMPADLMTP APEDRQKLLM DTHLEGHRGA
     QAIVTALHSD GIHWTKLKED ALEIIRSCPD CQKFNIAKHG YNPLTSIYAD APWDHICIDT
     AGPFPTSVQG NQYILLVVDV FTRYCVLKAL PDKSSLTIAL ALRSILSLFG RPKIIQSDNG
     TEYVNEIVRL YVESSGIDHR LISAYHPRAN GIVERWVGKA KNILHKRLQG RTEDWDLYVD
     STQEALNNTH TALHGTRPFS LMFARRPNEN KDYNNVLDKT KSPETMKQLE TRINEFNDTV
     LPAIREKIKT SQAASRDKFN QTHRILTDIP TGSQVTLKNV NRVAKSDPLY VGNYTVKRKT
     QGGSYVLVDA TGALLPRDVP PSQIKVISQE VSLSNTDQSE SYDVEAVLHH KGSPGNYLYK
     VRWKGYGEED DTWEPASHFH DYRPIQKYWS RISEQEPARE VQLVPKKDTT KKRKNVHRNV
     TNSKRNRR
//
DBGET integrated database retrieval system