ID I1H4Y2_BRADI Unreviewed; 1565 AA.
AC I1H4Y2;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 66.
DE RecName: Full=Intron-binding protein aquarius {ECO:0008006|Google:ProtNLM};
GN Name=100828122 {ECO:0000313|EnsemblPlants:KQK21461};
GN ORFNames=BRADI_1g60890v3 {ECO:0000313|EMBL:KQK21461.1};
OS Brachypodium distachyon (Purple false brome) (Trachynia distachya).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Pooideae; Stipodae; Brachypodieae; Brachypodium.
OX NCBI_TaxID=15368 {ECO:0000313|EMBL:KQK21461.1};
RN [1] {ECO:0000313|EMBL:KQK21461.1, ECO:0000313|EnsemblPlants:KQK21461}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK21461.1,
RC ECO:0000313|EnsemblPlants:KQK21461};
RX PubMed=20148030; DOI=10.1038/nature08747;
RG International Brachypodium Initiative;
RT "Genome sequencing and analysis of the model grass Brachypodium
RT distachyon.";
RL Nature 463:763-768(2010).
RN [2] {ECO:0000313|EMBL:KQK21461.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK21461.1};
RG The International Brachypodium Initiative;
RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D.,
RA Barry K., Shu S., Lindquist E., Wang M., Pitluck S., Vogel J.P.,
RA Garvin D.F., Mockler T.C., Schmutz J., Rokhsar D., Bevan M.W.;
RT "WGS assembly of Brachypodium distachyon.";
RL Submitted (JUN-2017) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:KQK21461}
RP IDENTIFICATION.
RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:KQK21461};
RG EnsemblPlants;
RL Submitted (AUG-2018) to UniProtKB.
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DR EMBL; CM000880; KQK21461.1; -; Genomic_DNA.
DR RefSeq; XP_003557801.1; XM_003557753.3.
DR STRING; 15368.I1H4Y2; -.
DR EnsemblPlants; KQK21461; KQK21461; BRADI_1g60890v3.
DR GeneID; 100828122; -.
DR Gramene; KQK21461; KQK21461; BRADI_1g60890v3.
DR KEGG; bdi:100828122; -.
DR eggNOG; KOG1806; Eukaryota.
DR HOGENOM; CLU_001195_0_0_1; -.
DR InParanoid; I1H4Y2; -.
DR OMA; RGRENNF; -.
DR OrthoDB; 7041at2759; -.
DR Proteomes; UP000008810; Chromosome 1.
DR ExpressionAtlas; I1H4Y2; baseline.
DR GO; GO:0071013; C:catalytic step 2 spliceosome; IBA:GO_Central.
DR GO; GO:0004386; F:helicase activity; IEA:InterPro.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IEA:InterPro.
DR CDD; cd17935; EEXXQc_AQR; 1.
DR CDD; cd18808; SF1_C_Upf1; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR048966; Aquarius_b-barrel.
DR InterPro; IPR048967; Aquarius_insert.
DR InterPro; IPR032174; Aquarius_N.
DR InterPro; IPR026300; CWF11_fam.
DR InterPro; IPR045055; DNA2/NAM7-like.
DR InterPro; IPR041679; DNA2/NAM7-like_C.
DR InterPro; IPR041677; DNA2/NAM7_AAA_11.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR047187; SF1_C_Upf1.
DR PANTHER; PTHR10887; DNA2/NAM7 HELICASE FAMILY; 1.
DR PANTHER; PTHR10887:SF5; RNA HELICASE AQUARIUS; 1.
DR Pfam; PF13086; AAA_11; 1.
DR Pfam; PF13087; AAA_12; 1.
DR Pfam; PF16399; Aquarius_N_1st; 1.
DR Pfam; PF21143; Aquarius_N_2nd; 1.
DR Pfam; PF21144; Aquarius_N_3rd; 1.
DR PIRSF; PIRSF038901; AQR_cwf11; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000008810}.
FT DOMAIN 53..464
FT /note="RNA helicase aquarius N-terminal"
FT /evidence="ECO:0000259|Pfam:PF16399"
FT DOMAIN 546..715
FT /note="RNA helicase aquarius beta-barrel"
FT /evidence="ECO:0000259|Pfam:PF21143"
FT DOMAIN 765..864
FT /note="RNA helicase aquarius insertion"
FT /evidence="ECO:0000259|Pfam:PF21144"
FT DOMAIN 884..1173
FT /note="DNA2/NAM7 helicase helicase"
FT /evidence="ECO:0000259|Pfam:PF13086"
FT DOMAIN 1182..1373
FT /note="DNA2/NAM7 helicase-like C-terminal"
FT /evidence="ECO:0000259|Pfam:PF13087"
FT REGION 822..844
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1514..1565
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 822..837
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1530..1565
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1565 AA; 179323 MW; 9D7ECCF8D8FDF327 CRC64;
MPKVYGTGVF EFRHPRAAEY PLPADVPAAA APDKVPSSTG ASITLLDIQR DRLTRVATEH
WGSPAAAAAF DAELVKEIYA TELRVEGRGR KTVPLHRVMI LEVSQYLENY LWPHFDPDKA
SFEHVMSMIL MVNEKFRENV AAWTCFHGRK DSFKGFLWRV LKLKEEDRPV SMAEKTNYLL
FMINAFQSLE DELVRETILQ VVSLKLWHTL SSGRLQMELC LNPELVKKWT KIKRKEAKEA
KKAGLPCNPS DMLENKFLRN LIEEFLEILD LKVMLSSQDG GEESVLNESL SGQVDDSSVL
YCERFMEFLI DMLSQLPTRR FLRPLVADVA VIAKCHLSTL YTHEKGRLFA QLVDLLQFYE
GFEINDQSGT QLSDDDVLQA HYSRFQAFQL LAFKQIPKLR DLALCNIGSI HKRADLTKKL
LVLSDTELQD LVCNKLKIIS EKDPYSGRRD FLIEVLVAFF EKRQSQKEAV NALPLYPNEQ
IMWDESLVPS INYSGEGCLA LPKLNLQFLT LHDYLLRNFN LFRLESTYEI REDIQEAVPH
LHSYINNEGD TAFRGWSRMA VPIKEFRITQ VKQPNIGEVK PSAVTADVTF SISSYRPQIK
SEWDSLKEHD VLFLLSIHPS FEPLSPEEAA KSTVPERLGL QYVRGCEVIE IRDEEGGLMN
DYTGRIKRDE WKPPKGEIRT VKIALDTAQY HIDVTELAEK HTENVYGTFN ILMRRKPKEN
NFKAILESIR DLMNETCVVP EWLHNIFLGY GNPSAAQWTN MPDLLETIDF KDTFLDADHV
VQSFPAFQVT FINTDGTENM HPSPPFRIKL SKKMREISHA LPGNVNSSDI TSKNNMADDE
GSQKEKLRVE TYIPADPGPY PQDKPKQNSV RFTPTQIGAI ISGIQPGLTM VVGPPGTGKT
DTAVQILNVL YHNCPSQRTL IITHSNQALN DLFEKIMQRD VPARYLLRLG QGEQELATDL
DFSRQGRVNA MLVRRLELLA EVAKLARSLH LPEDVSYTCE NAAYFWLLHV YARWEQFLAA
CAPNKENPSF VKDRFPFSEF FSDTPQPIFT GESFEKDMHA AKGCFKHLST IFQELEECRA
FELLKSTAER ANYLMTKQAK IVAMTCTHAA LKRRDFLQLG FKYDNLLMEE SAQILEIETF
IPTLLQRQED GYARLKRCIL IGDHHQLPPV VKNMAFQKYS HMDQSLFTRF VRLGVPYIEL
NAQGRARPSI AELYNWRYRE LGDLPYVREE AIFHKANSGF SYEYQLVDVP DYRGRGESAP
SPWFYQNEGE AEYIVSVYIY MRLIGYPANK ISILTTYNGQ KLLIRDVISR RCKPWNIEPP
CKVTTVDKFQ GQQNDFILLS LVRTRFVGHL RDVRRLIVAM SRARLGLYVF CRRSLFEQCY
ELQPTFKLLL RRPDKLGLNL EECTPFTERP LGEAGNIHYI TGVEDVGHLV NFRLEHLRQI
QSMQCYTTPP ENGNAGIVLR DAKEVMEEEN GEAFDAMNSN RMDEDTVETK GDMMQEGNKM
DAGNGEAGDV AIEDKMVEGS TDEAKDNMEE ENADEAKDKM EEENADEAKD KMEEEKAESK
GMEEE
//
