ID I1HQ84_BRADI Unreviewed; 1822 AA.
AC I1HQ84;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 24-JAN-2024, entry version 57.
DE RecName: Full=PHD-type domain-containing protein {ECO:0000259|PROSITE:PS51805};
GN Name=100828996 {ECO:0000313|EnsemblPlants:KQK09117};
GN ORFNames=BRADI_2g46130v3 {ECO:0000313|EMBL:KQK09117.1};
OS Brachypodium distachyon (Purple false brome) (Trachynia distachya).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Pooideae; Stipodae; Brachypodieae; Brachypodium.
OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:KQK09117};
RN [1] {ECO:0000313|EMBL:KQK09117.1, ECO:0000313|EnsemblPlants:KQK09117}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK09117.1,
RC ECO:0000313|EnsemblPlants:KQK09117};
RX PubMed=20148030; DOI=10.1038/nature08747;
RG International Brachypodium Initiative;
RT "Genome sequencing and analysis of the model grass Brachypodium
RT distachyon.";
RL Nature 463:763-768(2010).
RN [2] {ECO:0000313|EMBL:KQK09117.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK09117.1};
RG The International Brachypodium Initiative;
RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D.,
RA Barry K., Shu S., Lindquist E., Wang M., Pitluck S., Vogel J.P.,
RA Garvin D.F., Mockler T.C., Schmutz J., Rokhsar D., Bevan M.W.;
RT "WGS assembly of Brachypodium distachyon.";
RL Submitted (JUN-2017) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:KQK09117}
RP IDENTIFICATION.
RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:KQK09117};
RG EnsemblPlants;
RL Submitted (AUG-2018) to UniProtKB.
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DR EMBL; CM000881; KQK09117.1; -; Genomic_DNA.
DR EMBL; CM000881; KQK09118.1; -; Genomic_DNA.
DR RefSeq; XP_003569533.2; XM_003569485.3.
DR STRING; 15368.I1HQ84; -.
DR EnsemblPlants; KQK09117; KQK09117; BRADI_2g46130v3.
DR EnsemblPlants; KQK09118; KQK09118; BRADI_2g46130v3.
DR GeneID; 100828996; -.
DR Gramene; KQK09117; KQK09117; BRADI_2g46130v3.
DR Gramene; KQK09118; KQK09118; BRADI_2g46130v3.
DR KEGG; bdi:100828996; -.
DR eggNOG; KOG0732; Eukaryota.
DR HOGENOM; CLU_001894_1_1_1; -.
DR InParanoid; I1HQ84; -.
DR OMA; QSICTQA; -.
DR OrthoDB; 553033at2759; -.
DR Proteomes; UP000008810; Chromosome 2.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0016887; F:ATP hydrolysis activity; IBA:GO_Central.
DR GO; GO:0003682; F:chromatin binding; IBA:GO_Central.
DR GO; GO:0042393; F:histone binding; IBA:GO_Central.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR041569; AAA_lid_3.
DR InterPro; IPR045199; ATAD2-like.
DR InterPro; IPR003959; ATPase_AAA_core.
DR InterPro; IPR003960; ATPase_AAA_CS.
DR InterPro; IPR034732; EPHD.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR23069; AAA DOMAIN-CONTAINING; 1.
DR PANTHER; PTHR23069:SF7; P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN; 1.
DR Pfam; PF00004; AAA; 1.
DR Pfam; PF17862; AAA_lid_3; 1.
DR Pfam; PF13771; zf-HC5HC2H; 1.
DR SMART; SM00382; AAA; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00674; AAA; 1.
DR PROSITE; PS51805; EPHD; 1.
PE 4: Predicted;
KW Bromodomain {ECO:0000256|ARBA:ARBA00023117};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000008810};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771}.
FT DOMAIN 385..497
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS51805"
FT REGION 1..119
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 165..186
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 206..253
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1477..1513
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1527..1570
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 41..60
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 206..227
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1495..1513
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1553..1570
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1822 AA; 199787 MW; C95D98D11FF73E2B CRC64;
MPPSTPKRRR GAAASPGGRK KQKRLDAICD VAPAPPRGCG GDDGDDSDGE VVRRSTRARR
APTMLDTSPA PSPRPKRSRR GGDVVGSSGS SRRGGKGRAR PDADARMVDE DEDEEDDGEN
VVWRSRLRDR VKGKAGAGRR VRTLWFEDED GEEYDAKTVV VDVRDGAKKE EGQETGGLPS
REVGEREINL TIDLNVEHES VEGVTIVEEQ EEENGGGQEE EGEEIGTATD LHEDNVEEVG
EEDGLQGEEK TDELACDENT YAAGSGNLGG NDQLDVEIAE VRNLPDEQQM ELDDCGPGEQ
VEEVRRDEQM DDAPNVVLPE DALIERVGKA LVSDAKRVVV EVKEGRRCGL CGGGTDGKPP
RVALHDTADS ENEAYEGALP SEEPNYDILD GFSNDPGWLG RLLGPINDRF GISRVWVHLN
CAVWSPEVYF AGLGRLKNVR AALCRGRLLK CSRCGRPGAT IGCRVDRCPK TYHLPCSRTE
ACIFDHRKFL ITCNDHRHLF QPQGNKYAEL LRKIKIKKMK ADIRKMSQDA CRKDIEAEEK
WLENCGDDEE FLKREGKRLN RDLLRIAPVY IGGSSENGKS YRGWESVAGL STVIQSMKEV
VILPLLYPEF FSSLGLTPPR GVLLHGHPGT GKTLVVRALI GACSQGGRRI AYFARKGADC
LGKYVGDAER QLRLLFQVAE KCQPSIIFFD EIDGLAPSRS RQQDQTHNSV VATLLSLLDG
LKSRGSVIVI GATNRPEAID PALRRPGRFD REIYFPLPTL EDRSAILSLH TKNWPSPISG
AFLSAVASQT IGYAGADLQA ICTQAALNAL KRTCPLQDIL RSAEKGTEQG RLPLPSIDVE
ERDWLSALAA APPPCSQREA GIAVNDLVSS PLDSYLLPCL LKPLLHLLIS LYLDERIWLP
SSLLKASACI KQVVFSSMEK NNVPHTFWSS YLPSLIQQKD FANRIGAILS SYGLTASQLG
NHGSVVPSHN EQHEKFDDRR LNSTGSPIKG GLAHKLSGFR ALVAGAPRSG QRHLIRCILH
GFMGHIVIHK LDLATMAQEG NGDILNGLTQ ILLKGLNIGR CIIYMPRIDL WAVNKAHELE
TGDHALNMGT SKLATSPVES MTKCSEIWNT LVDQMGSLLA SASITVLATS ELKFQDLPSR
VNHFFSTHVV DQCLASSEHT IPRFSVNVDS YSSWDEVLDS CATRLSHDLI QQHVQLLHDR
AHNNHDEQKK VFARMESSAL GECKSSFCID KQSSCPTNLA TCSSQLQPPT SDVKDKEENA
EKLDFLGSVS RKPSSGIVKG NESLAIIAFG IQILQHPQFS KLCWVTSKLR EGPCTDINGP
WKGWPFNSCL LHSSSSPDKS LSEGNNILKG KEKALCVRGL VAVGLSAYRG VYVSVMEVCA
EVRKVLELLV GQIQIKILEK KSRYRYFHIL SQVAYLDDMV NSWAYTFQRL HPNNMTIASG
TKITSLGKTC ARECGSTGCN TESNLLVAPA GSTEVQHTSA KHSRDHPVGP TCGSVMQDSP
AQQGPGQLEC NLDNDHLTSI SSMDTVEHDL SHSASHDVRK GPLAPPDTVI NDRGSGGVNN
NRKMSRVTNG EETCTPDIQI SENLTKSVEK FNNVQRAENS GVFSASIENV EVSRNMLSSE
AHGNGNEQNI TFLSKDVESG QQQDGMMDSS VPKSSCFYKC CSPCFHAVYK LSHDVLSNSV
RTNLHCLTVD DMHDTLSSWS LNLLATVRKW YSSQDVVGCK ELFGKRHDLD VTSEHCVCQT
DASFVSRDCM CHLESNGEAG IINKKSHSLC EQSLSFFFKH GVLMPPDLTA GTTLHCSFRR
LCVCSIPGTI SMLFSSQVDA II
//
