ID I1I8A3_BRADI Unreviewed; 1038 AA.
AC I1I8A3;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 56.
DE RecName: Full=JmjC domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=100826668 {ECO:0000313|EnsemblPlants:KQJ98840};
GN ORFNames=BRADI_3g39457v3 {ECO:0000313|EMBL:KQJ98840.1};
OS Brachypodium distachyon (Purple false brome) (Trachynia distachya).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Pooideae; Stipodae; Brachypodieae; Brachypodium.
OX NCBI_TaxID=15368 {ECO:0000313|EMBL:KQJ98840.1};
RN [1] {ECO:0000313|EMBL:KQJ98840.1, ECO:0000313|EnsemblPlants:KQJ98840}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ98840.1,
RC ECO:0000313|EnsemblPlants:KQJ98840};
RX PubMed=20148030; DOI=10.1038/nature08747;
RG International Brachypodium Initiative;
RT "Genome sequencing and analysis of the model grass Brachypodium
RT distachyon.";
RL Nature 463:763-768(2010).
RN [2] {ECO:0000313|EMBL:KQJ98840.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ98840.1};
RG The International Brachypodium Initiative;
RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D.,
RA Barry K., Shu S., Lindquist E., Wang M., Pitluck S., Vogel J.P.,
RA Garvin D.F., Mockler T.C., Schmutz J., Rokhsar D., Bevan M.W.;
RT "WGS assembly of Brachypodium distachyon.";
RL Submitted (JUN-2017) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:KQJ98840}
RP IDENTIFICATION.
RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:KQJ98840};
RG EnsemblPlants;
RL Submitted (AUG-2018) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; CM000882; KQJ98840.1; -; Genomic_DNA.
DR RefSeq; XP_010235272.1; XM_010236970.2.
DR AlphaFoldDB; I1I8A3; -.
DR STRING; 15368.I1I8A3; -.
DR EnsemblPlants; KQJ98840; KQJ98840; BRADI_3g39457v3.
DR GeneID; 100826668; -.
DR Gramene; KQJ98840; KQJ98840; BRADI_3g39457v3.
DR KEGG; bdi:100826668; -.
DR eggNOG; KOG1246; Eukaryota.
DR HOGENOM; CLU_000991_8_1_1; -.
DR InParanoid; I1I8A3; -.
DR OMA; HQCIEYW; -.
DR OrthoDB; 1205686at2759; -.
DR Proteomes; UP000008810; Chromosome 3.
DR ExpressionAtlas; I1I8A3; baseline.
DR GO; GO:0000785; C:chromatin; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0034647; F:histone H3K4me/H3K4me2/H3K4me3 demethylase activity; IBA:GO_Central.
DR GO; GO:0006338; P:chromatin remodeling; IBA:GO_Central.
DR GO; GO:0010468; P:regulation of gene expression; IBA:GO_Central.
DR Gene3D; 3.30.160.360; -; 1.
DR Gene3D; 2.60.120.650; Cupin; 1.
DR InterPro; IPR003889; FYrich_C.
DR InterPro; IPR003888; FYrich_N.
DR InterPro; IPR003347; JmjC_dom.
DR InterPro; IPR003349; JmjN.
DR InterPro; IPR004198; Znf_C5HC2.
DR PANTHER; PTHR10694; LYSINE-SPECIFIC DEMETHYLASE; 1.
DR PANTHER; PTHR10694:SF140; OS05G0302300 PROTEIN; 1.
DR Pfam; PF05965; FYRC; 1.
DR Pfam; PF05964; FYRN; 1.
DR Pfam; PF02373; JmjC; 1.
DR Pfam; PF02375; JmjN; 1.
DR Pfam; PF02928; zf-C5HC2; 1.
DR SMART; SM00542; FYRC; 1.
DR SMART; SM00541; FYRN; 1.
DR SMART; SM00558; JmjC; 1.
DR SMART; SM00545; JmjN; 1.
DR SUPFAM; SSF51197; Clavaminate synthase-like; 1.
DR PROSITE; PS51543; FYRC; 1.
DR PROSITE; PS51542; FYRN; 1.
DR PROSITE; PS51184; JMJC; 1.
DR PROSITE; PS51183; JMJN; 1.
PE 4: Predicted;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000008810};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 79..120
FT /note="JmjN"
FT /evidence="ECO:0000259|PROSITE:PS51183"
FT DOMAIN 288..454
FT /note="JmjC"
FT /evidence="ECO:0000259|PROSITE:PS51184"
FT REGION 1..76
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 142..166
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1013..1038
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 15..29
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 31..49
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1020..1038
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1038 AA; 116985 MW; 5C49FBF81F866094 CRC64;
MVFSSASPME EKSGGLGRPP RREKRRMCNP AASSEPSSMA MTLQDLCSSR SCEEDGGGTA
TTHGKWNPYE SHRPEIDDAP VFTPTEEEFE DVIGYITSIC PLAEKYGICR IVPPPSWRPL
CPLKEKSFWH CTEFNTRVQE VDKLQNREPT KKRTQPRVQK KRKRRKRLRF GMSRRRPSAN
ASESADSGEK FGFQSGSDFT LEEFQKYADE FKQQYFGMKG SDEISLSEIK NRKEIWRPSV
EEIEGEYWRI VVCPDDEVEV DYGADLDTAT FSSGFNKLSL SDANKQDPYC LSCWNLNNLR
RQHGSVLSFE TEDISGVVVP WLYVGMCFSS FCWHVEDHFL YSLNYMHFGE QKVWYGVRGD
DAVKLEEAMK RNLPRLFEDQ PDLLHELVTQ LSPSVLKSEG IPVYRVVQNP GEFVLTLPRA
YHSGFNCGFN CAEAVNVAPV DWLPHGQCAV ELYREQRRKT SISHDKLLLK TAQRALRQLW
INLGNCRCGQ TEYVWLDTCG KNGMLTSAVK TRVKMEGAAR ETNAVLQYKK MDQDYDSTDR
ECFSCFYDLH LSAVSCKCSP DRFACLNHAN LLCSCEIGRI FLLYRYSMEE LNALVAALEG
DSAALYQWIQ FDQDFVSQSG SMQQNNMDFS KSKELCESAT DLNIGCGFDD CHDLDKTGQQ
KEKKVQNKCA DVNMENKSSP RIKNVLVRSS DTSNAACFSI SSCTASEKHD KDKIAIDSES
IVTRINPPVS NSQFSQSSKC LSELSCPKGN STPSSKTTKK LFGVDIGCNM TKTSDAQVSQ
LVKPSTSQPD EVSRPTILWS TVEPLEYGTV MVGKNWCNHQ AIFPKGFRSR VTFHSVLDPT
KTCGYISEVL DAGLFGPLFK VTVEDLPEIS FTHTSPMECW NSVRDRVNEE IEKQHVVGKS
GGCAILSTNS VNGLEMFGFS FPPIIQAIEA LDPYHRFLEY WLSKHMPPVK ELPSGSVMAE
AVNGMNNSPI RLPGVDITSN ESEHSSFRHK SCAEEVKLDR LLKKAKLPEE PELIDTNKVF
SSREHSSSNW SGSRHSAG
//
