ID I1J424_SOYBN Unreviewed; 1526 AA.
AC I1J424;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 2.
DT 27-MAR-2024, entry version 68.
DE RecName: Full=Intron-binding protein aquarius {ECO:0008006|Google:ProtNLM};
GN Name=100807042 {ECO:0000313|EnsemblPlants:KRH40912};
GN ORFNames=GLYMA_09G285300 {ECO:0000313|EMBL:KRH40912.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH40912};
RN [1] {ECO:0000313|EMBL:KRH40912.1, ECO:0000313|EnsemblPlants:KRH40912}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH40912};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH40912.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH40912}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH40912};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH40912.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH40912.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PIRNR:PIRNR038901}.
CC -!- SIMILARITY: Belongs to the CWF11 family.
CC {ECO:0000256|PIRNR:PIRNR038901}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; CM000842; KRH40912.1; -; Genomic_DNA.
DR RefSeq; XP_003556971.1; XM_003556923.3.
DR AlphaFoldDB; I1J424; -.
DR SMR; I1J424; -.
DR STRING; 3847.I1J424; -.
DR PaxDb; 3847-GLYMA0048S00340-1; -.
DR EnsemblPlants; KRH40912; KRH40912; GLYMA_09G285300.
DR GeneID; 100807042; -.
DR Gramene; KRH40912; KRH40912; GLYMA_09G285300.
DR KEGG; gmx:100807042; -.
DR eggNOG; KOG1806; Eukaryota.
DR HOGENOM; CLU_001195_0_0_1; -.
DR InParanoid; I1J424; -.
DR OMA; RMIAMTC; -.
DR OrthoDB; 7041at2759; -.
DR Proteomes; UP000008827; Chromosome 9.
DR GO; GO:0071013; C:catalytic step 2 spliceosome; IBA:GO_Central.
DR GO; GO:0004386; F:helicase activity; IEA:InterPro.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IEA:InterPro.
DR CDD; cd17935; EEXXQc_AQR; 1.
DR CDD; cd18808; SF1_C_Upf1; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR048966; Aquarius_b-barrel.
DR InterPro; IPR048967; Aquarius_insert.
DR InterPro; IPR032174; Aquarius_N.
DR InterPro; IPR026300; CWF11_fam.
DR InterPro; IPR045055; DNA2/NAM7-like.
DR InterPro; IPR041679; DNA2/NAM7-like_C.
DR InterPro; IPR041677; DNA2/NAM7_AAA_11.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR047187; SF1_C_Upf1.
DR PANTHER; PTHR10887; DNA2/NAM7 HELICASE FAMILY; 1.
DR PANTHER; PTHR10887:SF5; RNA HELICASE AQUARIUS; 1.
DR Pfam; PF13086; AAA_11; 1.
DR Pfam; PF13087; AAA_12; 1.
DR Pfam; PF16399; Aquarius_N_1st; 1.
DR Pfam; PF21143; Aquarius_N_2nd; 1.
DR Pfam; PF21144; Aquarius_N_3rd; 1.
DR PIRSF; PIRSF038901; AQR_cwf11; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
PE 3: Inferred from homology;
KW mRNA processing {ECO:0000256|PIRNR:PIRNR038901};
KW mRNA splicing {ECO:0000256|PIRNR:PIRNR038901};
KW Nucleus {ECO:0000256|PIRNR:PIRNR038901};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827}.
FT DOMAIN 56..468
FT /note="RNA helicase aquarius N-terminal"
FT /evidence="ECO:0000259|Pfam:PF16399"
FT DOMAIN 550..719
FT /note="RNA helicase aquarius beta-barrel"
FT /evidence="ECO:0000259|Pfam:PF21143"
FT DOMAIN 769..868
FT /note="RNA helicase aquarius insertion"
FT /evidence="ECO:0000259|Pfam:PF21144"
FT DOMAIN 880..1177
FT /note="DNA2/NAM7 helicase helicase"
FT /evidence="ECO:0000259|Pfam:PF13086"
FT DOMAIN 1186..1378
FT /note="DNA2/NAM7 helicase-like C-terminal"
FT /evidence="ECO:0000259|Pfam:PF13087"
FT REGION 1454..1504
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1456..1479
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1526 AA; 175059 MW; F4D3D9AD1428A4AF CRC64;
MTKVYGTGLY DFRRHRVAEY PVAAPPSESK AEVPKAGGGG GFPSSITLSE IQRDRLTKIA
EANWLKSGDA ARPKKDFDPE LVRKIYETEL LVKEGSKPVP LQRVMILEVS QYLENYLWPH
FDPLAATFEH VMSIIIMVNE KFRENVAAWT CFHERKDAFK VFLERVLRLK EGRELSIAEK
TNYLVFMINA FQSLEDEVVS RTILRLANLK SWYSLSYGRF QMELCLNPGL VKKWKRMIKK
EPVKGGGSHL DPLTKVEVMF VRNLIEEFME ILDSQVFPQK QLSGEDNELI DATGLGLLND
ACVLYCERFM EFLIDLLSQL PTRRYLRPLV ADVAVVAKCH LSALYRHEKG KLFAQLVDLL
QFYEGFEIND HTGTQLTDHE VLESHYSRMQ SFQLLAFKKM EKLRELALTN IGSIHKRANL
TKKLSVLSPE ELRNFVCCKL KLVSKEDPWS ERVDFLIEVM LSYFEKQQSQ KEAINALPLY
PNEQIMWDES VVPSINYSGE GCLALPKLNL QFLTLHDYLL RNFNLFRLES TYEIREDIQE
AVPHLLAYIN NDGGTAFRGW SRMGVPIKEF KITEVKQPNI GEVKPSSVTA EVTYSVSSYR
AHIRSEWDAL KEHDVLFLLS IRPLFEPLSA EEEDKASVPQ KLGLQFVRGC EVIEIRDEEG
NLMNDFSGKI KRDEWKPPKG ELRTVTVALD TAQYHMDVSN IAEKGAEDVY GTFNVLMRRK
PKENNFKAIL ESIRDLMNEY CIVPKWLENI FLGYGDPSAA QWTNMPDVLE TVDFKDTFVD
ADHLKESFVD YEVSFVNSDG SENLNPRPPF KIKLPRTLKP NNGTLTGHAM STSGATNDIN
VVDANYQKEA LVIETYTPPD PGPYPQDQPK QNLVRFTPTQ VEAIISGIQP GLTMVVGPPG
TGKTDTAVQI LNVLYHNCPS QRTLIITHSN QALNDLFEKI MQRDVPARYL LRLGQGEQEL
ATDLDFSRQG RVNAMLVRRL ELLSEVERLA RSLQLPEDVG YTCETAGYFW LLHVYSRWEQ
FLAACAENKE KSTFVRDRFP FKEFFYDTPH PVFTGESFEK DMQAATGCFR HLKNMFQELE
ECRAFELLKS TADRANYLMT KQAKIVAMTC THAALKRKDF LQLGFKYDNL LMEESAQILE
IETFIPMLLQ RQEDGHARLK RCILIGDHHQ LPPVVKNMAF QKYSHMDQSL FTRFVRLGIP
YIELNAQGRA RPSIAKLYNW RYRDLGDLPS VKEEVVFNRA NAGFAYDYQL VDVPDYLGKG
ETTPSPWFYQ NEGEAEYVVS VYIYMRLLGY PANKISILTT YNGQKLLIRD VVNRRCVPYD
FIGPPSKVTT VDKFQGQQND FILLSIVRTR FVGHLRDVRR LVVAMSRARL GLYVFCRRSL
FEQCYELQPT FQLLLERPDH LALNVNEITS YTERNFEDPG PGHHVHLVSG IEEMGSIIDR
LYQEKLRHQF DQNGPYLSHL EPSENTDGMQ SGQQTMDTDM PEQTEDDMPH KIKEATTVDN
VTGYNNVEDV TMVDNSDGVA NGNPSP
//
